RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ETFBKMTQ8IXQ9 262 aa8.11□□□□□ -1.11
VPS35-204ENST00000563884 MKNK1Q9BUB5 465 aa8.11□□□□□ -1.11
VPS35-204ENST00000563884 RREB1Q92766 1687 aa8.11□□□□□ -1.11
VPS35-204ENST00000563884 XRN1Q8IZH2 1706 aaKnown RBP8.1□□□□□ -1.11
VPS35-204ENST00000563884 R3HDM1Q15032 1099 aaKnown RBP8.1□□□□□ -1.11
VPS35-204ENST00000563884 IL22RA1Q8N6P7 574 aa8.1□□□□□ -1.11
VPS35-204ENST00000563884 CLP1Q92989 425 aaKnown RBP8.1□□□□□ -1.11
VPS35-204ENST00000563884 DISP2A7MBM2 1401 aa8.1□□□□□ -1.11
VPS35-204ENST00000563884 MTUS2Q5JR59 1369 aa8.1□□□□□ -1.11
VPS35-204ENST00000563884 DLL1O00548 723 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 SOX18P35713 384 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 NLRP13Q86W25 1043 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 COL26A1Q96A83 441 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 MEGF10Q96KG7 1140 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 PSMG3-AS1Q96PY0 264 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 NUP188Q5SRE5 1749 aa8.09□□□□□ -1.11
VPS35-204ENST00000563884 DUOX2Q9NRD8 1548 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 PLCH1Q4KWH8 1693 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 TSPY4P0CV99 314 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 TSPY10P0CW01 314 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 LRP8Q14114 963 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 NAA30Q147X3 362 aaPredicted RBP8.08□□□□□ -1.12
VPS35-204ENST00000563884 TRIP4Q15650 581 aaPredicted RBP8.08□□□□□ -1.12
VPS35-204ENST00000563884 PIK3R5Q8WYR1 880 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 AKTIPQ9H8T0 292 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 FAM13BQ9NYF5 915 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 CXXC1Q9P0U4 656 aaPredicted RBP8.08□□□□□ -1.12
VPS35-204ENST00000563884 PARD3Q8TEW0 1356 aa8.08□□□□□ -1.12
VPS35-204ENST00000563884 MYOM2P54296 1465 aa8.07□□□□□ -1.12
VPS35-204ENST00000563884 ZFYVE9O95405 1425 aa8.07□□□□□ -1.12
VPS35-204ENST00000563884 HOXD8P13378 290 aaPredicted RBP8.07□□□□□ -1.12
VPS35-204ENST00000563884 KRTAP4-8Q9BYQ9 185 aa8.07□□□□□ -1.12
VPS35-204ENST00000563884 MRPL18Q9H0U6 180 aaKnown RBP8.07□□□□□ -1.12
VPS35-204ENST00000563884 TBX22Q9Y458 520 aa8.07□□□□□ -1.12
VPS35-204ENST00000563884 KANK1Q14678 1352 aa8.07□□□□□ -1.12
VPS35-204ENST00000563884 ALX3O95076 343 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 FAM26DQ5JW98 314 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 CAPN12Q6ZSI9 719 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 KRT27Q7Z3Y8 459 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 SRA1Q9HD15 236 aaKnown RBP8.06□□□□□ -1.12
VPS35-204ENST00000563884 TRIM33Q9UPN9 1127 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 USP32Q8NFA0 1604 aa8.06□□□□□ -1.12
VPS35-204ENST00000563884 TMEM131LA2VDJ0 1609 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 PTCD1O75127 700 aaKnown RBP8.05□□□□□ -1.12
VPS35-204ENST00000563884 PRR23CQ6ZRP0 262 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 MAP4K3Q8IVH8 894 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 DCAF11Q8TEB1 546 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 SPACA7Q96KW9 195 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 SPON1Q9HCB6 807 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 TIMELESSQ9UNS1 1208 aa8.05□□□□□ -1.12
VPS35-204ENST00000563884 FNDC3AQ9Y2H6 1198 aaKnown RBP8.05□□□□□ -1.12
VPS35-204ENST00000563884 ZNF644Q9H582 1327 aaPredicted RBP8.04□□□□□ -1.12
VPS35-204ENST00000563884 ADGRL3Q9HAR2 1447 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 RIMS2Q9UQ26 1411 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 LMTK2Q8IWU2 1503 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 TMEM88BA6NKF7 163 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 TNFRSF10BO14763 440 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 HYAL3O43820 417 aaPredicted RBP8.04□□□□□ -1.12
VPS35-204ENST00000563884 ZAP70P43403 619 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 HYAL2Q12891 473 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 TTC39BQ5VTQ0 682 aaPredicted RBP8.04□□□□□ -1.12
VPS35-204ENST00000563884 UNC5CLQ8IV45 518 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 CACTIN-AS1Q8N1I8 211 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS35-204ENST00000563884 OR13H1Q8NG92 308 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 GPR152Q8TDT2 470 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 PPME1Q9Y570 386 aa8.04□□□□□ -1.12
VPS35-204ENST00000563884 ERBINQ96RT1 1412 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 SLIT2O94813 1529 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 F8W735 103 aaPredicted RBP8.03□□□□□ -1.12
VPS35-204ENST00000563884 SCNN1AP37088 669 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 SETDB1Q15047 1291 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 TMEM130Q8N3G9 435 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 MUC3BQ9H195 1237 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 SLC52A1Q9NWF4 448 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 NEXMIFQ5QGS0 1516 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 CEP162Q5TB80 1403 aa8.03□□□□□ -1.12
VPS35-204ENST00000563884 CROCC2H7BZ55 1655 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 NRKQ7Z2Y5 1582 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 IDI1Q13907 227 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 NBPF8Q3BBV2 869 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 COL13A1Q5TAT6 717 aaPredicted RBP8.02□□□□□ -1.13
VPS35-204ENST00000563884 CEP135Q66GS9 1140 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 DZIP1LQ8IYY4 767 aaKnown RBP8.02□□□□□ -1.13
VPS35-204ENST00000563884 LACRTQ9GZZ8 138 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 STIM2Q9P246 746 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 NOS1P29475 1434 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 ADAMTS13Q76LX8 1427 aa8.02□□□□□ -1.13
VPS35-204ENST00000563884 IQGAP3Q86VI3 1631 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 LINC01387J3KSC0 135 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 SMNDC1O75940 238 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS35-204ENST00000563884 GLB1P16278 677 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 ATP11AP98196 1134 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 AGGF1Q8N302 714 aaeCLIP8.01□□□□□ -1.13
VPS35-204ENST00000563884 ABTB2Q8N961 1025 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 RNF112Q9ULX5 631 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 RGPD3A6NKT7 1758 aaPredicted RBP8.01□□□□□ -1.13
VPS35-204ENST00000563884 RGPD4Q7Z3J3 1758 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 MYOM1P52179 1685 aa8.01□□□□□ -1.13
VPS35-204ENST00000563884 C1orf167Q5SNV9 1468 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms