RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FANCLQ9NW38 375 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 FOXN1O15353 648 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 ZFYP08048 801 aaPredicted RBP15.24■□□□□ 0.03
CLN3-210ENST00000563874 MYL5Q02045 173 aa15.24■□□□□ 0.03
CLN3-210ENST00000563874 URI1O94763 535 aaPredicted RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 H2AFXP16104 143 aaPredicted RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 LONRF3Q496Y0 759 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 NWD2Q9ULI1 1742 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 B4E1Z4 1266 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 IKBKBO14920 756 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 FOXP4Q8IVH2 680 aaPredicted RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 EPC1Q9H2F5 836 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 ANGEL1Q9UNK9 670 aaKnown RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 C1orf167Q5SNV9 1468 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 IDH1O75874 414 aaKnown RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 SLC9C2Q5TAH2 1124 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 METTL16Q86W50 562 aaKnown RBP15.23■□□□□ 0.03
CLN3-210ENST00000563874 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLN3-210ENST00000563874 FAM53CQ9NYF3 392 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 TUBE1Q9UJT0 475 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 AKAP2Q9Y2D5 859 aa15.23■□□□□ 0.03
CLN3-210ENST00000563874 MCAMP43121 646 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 PLCD3Q8N3E9 789 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 TOP1P11387 765 aaKnown RBP15.22■□□□□ 0.03
CLN3-210ENST00000563874 PDE4BQ07343 736 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 PTPAQ15257 358 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 TRIM65Q6PJ69 517 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 NFXL1Q6ZNB6 911 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 UBXN4Q92575 508 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 HPSEQ9Y251 543 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 PCDHA5Q9Y5H7 936 aa15.22■□□□□ 0.03
CLN3-210ENST00000563874 TRPM3Q9HCF6 1732 aaPredicted RBP15.22■□□□□ 0.03
CLN3-210ENST00000563874 ZMYM6O95789 1325 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 APOA5Q6Q788 366 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 PDILTQ8N807 584 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 CNNM3Q8NE01 707 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 CARD6Q9BX69 1037 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 ATG3Q9NT62 314 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 FHOD1Q9Y613 1164 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 BMP6P22004 513 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 METTL24Q5JXM2 366 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 MNS1Q8NEH6 495 aa15.21■□□□□ 0.03
CLN3-210ENST00000563874 IFIT5Q13325 482 aaKnown RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 BMS1Q14692 1282 aaKnown RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 OLFM4Q6UX06 510 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 VSTM4Q8IW00 320 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 SECISBP2LQ93073 1101 aaKnown RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 MAP3K14Q99558 947 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 CPDO75976 1380 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 SH2B2O14492 632 aaPredicted RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 KCNJ6P48051 423 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 ZNF827Q17R98 1081 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 TICAM2Q86XR7 235 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 REXO1L1PQ8IX06 675 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 CCDC82Q8N4S0 544 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 JMYQ8N9B5 988 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 TIGD1Q96MW7 591 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 C19orf44Q9H6X5 657 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 INTS13Q9NVM9 706 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 KCNH3Q9ULD8 1083 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 RANBP6O60518 1105 aaKnown RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 SEC31AO94979 1220 aaKnown RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 PNMA6AP0CW24 399 aaPredicted RBP15.2■□□□□ 0.02
CLN3-210ENST00000563874 FBXO41Q8TF61 875 aa15.2■□□□□ 0.02
CLN3-210ENST00000563874 CBFA2T2O43439 604 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 GPTP24298 496 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 IARSP41252 1262 aaKnown RBP15.19■□□□□ 0.02
CLN3-210ENST00000563874 GRIN1Q05586 938 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 RESP18Q5W5W9 173 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 CCDC102BQ68D86 513 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 TRMT44Q8IYL2 757 aaKnown RBP15.19■□□□□ 0.02
CLN3-210ENST00000563874 SLC26A6Q9BXS9 759 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 PPP6R2O75170 966 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 ADKP55263 362 aaKnown RBP15.19■□□□□ 0.02
CLN3-210ENST00000563874 LDHAL6AQ6ZMR3 332 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 KRBA2Q6ZNG9 492 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.19■□□□□ 0.022e-6■■■■■ 40.7
CLN3-210ENST00000563874 PIH1D3Q9NQM4 214 aaKnown RBP15.19■□□□□ 0.02
CLN3-210ENST00000563874 PHLPP2Q6ZVD8 1323 aa15.19■□□□□ 0.02
CLN3-210ENST00000563874 GOLGA8AA7E2F4 631 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ZBTB43O43298 467 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ATP2B1P20020 1258 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 TRIM29Q14134 588 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 CPLX2Q6PUV4 134 aaKnown RBP15.18■□□□□ 0.02
CLN3-210ENST00000563874 ZCRB1Q8TBF4 217 aaKnown RBP15.18■□□□□ 0.02
CLN3-210ENST00000563874 NOL10Q9BSC4 688 aaKnown RBP15.18■□□□□ 0.02
CLN3-210ENST00000563874 PARP3Q9Y6F1 533 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 GLI3P10071 1580 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 VWA3AA6NCI4 1184 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 CDKL5O76039 1030 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ADD2P35612 726 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 TCIRG1Q13488 830 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 GRAMD1CQ8IYS0 662 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 WDR24Q96S15 920 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ISCA1Q9BUE6 129 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLN3-210ENST00000563874 PPP2R2CQ9Y2T4 447 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 UBN2Q6ZU65 1347 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 ZNF532Q9HCE3 1301 aa15.18■□□□□ 0.02
CLN3-210ENST00000563874 TJP1Q07157 1748 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms