RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 TOB2Q14106 344 aaPredicted RBP11.96□□□□□ -0.49
RNF40-204ENST00000563683 ZMYM1Q5SVZ6 1142 aa11.96□□□□□ -0.49
RNF40-204ENST00000563683 IFIT1BQ5T764 474 aaKnown RBP11.96□□□□□ -0.49
RNF40-204ENST00000563683 SYNE4Q8N205 404 aa11.96□□□□□ -0.49
RNF40-204ENST00000563683 GOLGA6L1Q8N7Z2 621 aa11.96□□□□□ -0.49
RNF40-204ENST00000563683 MAGEC2Q9UBF1 373 aaPredicted RBP11.96□□□□□ -0.49
RNF40-204ENST00000563683 PSDA5PKW4 1024 aaPredicted RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 ATP8B1O43520 1251 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 SRRTQ9BXP5 876 aaKnown RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 STX8Q9UNK0 236 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 TAF6LQ9Y6J9 622 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 TNNT3P45378 269 aaPredicted RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 HNRNPH2P55795 449 aaKnown RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 PUM3Q15397 648 aaKnown RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 ERCC6LQ2NKX8 1250 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 SOGA3Q5TF21 947 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 CMTR1Q8N1G2 835 aaKnown RBP11.96□□□□□ -0.5
RNF40-204ENST00000563683 CDK5RAP3Q96JB5 506 aa11.96□□□□□ -0.5
RNF40-204ENST00000563683 ZNF202O95125 648 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 ARID5BQ14865 1188 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 NBPF5PQ86XG9 351 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 ZBTB38Q8NAP3 1195 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 NSUN7Q8NE18 718 aaKnown RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 PGBD1Q96JS3 809 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 CWC15Q9P013 229 aaKnown RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 hCG_1642624A0A1W2PR95 340 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 CLCN6P51797 869 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 ARHGAP29Q52LW3 1261 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 ZNF444Q8N0Y2 327 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 ZNF274Q96GC6 653 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 VAT1LQ9HCJ6 419 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 ZNF446Q9NWS9 450 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.95□□□□□ -0.56e-7■■■■□ 20.7
RNF40-204ENST00000563683 MYO5BQ9ULV0 1848 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 MAGEB6P1A0A0J9YX57 407 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 M0R2C6 588 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 PNMA6AP0CW24 399 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 PHKA1P46020 1223 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 KCNJ6P48051 423 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 KRT40Q6A162 431 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 TMTC2Q8N394 836 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 DHX58Q96C10 678 aa11.95□□□□□ -0.5
RNF40-204ENST00000563683 OSBPL5Q9H0X9 879 aaPredicted RBP11.95□□□□□ -0.5
RNF40-204ENST00000563683 ATL3Q6DD88 541 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 LPIN2Q92539 896 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 CABP5Q9NP86 173 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 FHOD1Q9Y613 1164 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 H7C1W4 665 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 SSBP05455 408 aaKnown RBP eCLIP11.94□□□□□ -0.5
RNF40-204ENST00000563683 STX17P56962 302 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 MYSM1Q5VVJ2 828 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 C11orf57Q6ZUT1 292 aaPredicted RBP11.94□□□□□ -0.5
RNF40-204ENST00000563683 PUS7LQ9H0K6 701 aaKnown RBP11.94□□□□□ -0.5
RNF40-204ENST00000563683 ST7Q9NRC1 585 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 GJB4Q9NTQ9 266 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 KCNJ14Q9UNX9 436 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 ZBTB1Q9Y2K1 713 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 SPATA31D1Q6ZQQ2 1576 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 PCCAP05165 728 aaPredicted RBP11.94□□□□□ -0.5
RNF40-204ENST00000563683 CTSWP56202 376 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 SYT10Q6XYQ8 523 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 DNAI1Q9UI46 699 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 PCDHA7Q9UN72 937 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 HEG1Q9ULI3 1381 aa11.94□□□□□ -0.5
RNF40-204ENST00000563683 NBPF26B4DH59 902 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 SNAP23O00161 211 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 STIM1Q13586 685 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 NBPF14Q5TI25 921 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 NBPF10Q6P3W6 841 aaKnown RBP11.93□□□□□ -0.5
RNF40-204ENST00000563683 NBPF15Q8N660 670 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 SPATA5Q8NB90 893 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 WDR17Q8IZU2 1322 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 CCDC194A0A1B0GVG4 234 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 ZSCAN12O43309 604 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 DIS3L2Q8IYB7 885 aaKnown RBP11.93□□□□□ -0.5
RNF40-204ENST00000563683 NLRP3Q96P20 1036 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 ZHX3Q9H4I2 956 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 ZSWIM4Q9H7M6 989 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 CEMIPQ8WUJ3 1361 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 PDE6AP16499 860 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 AEBP2Q6ZN18 517 aaPredicted RBP11.93□□□□□ -0.5
RNF40-204ENST00000563683 PPP1R13BQ96KQ4 1090 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 CLIC4Q9Y696 253 aa11.93□□□□□ -0.5
RNF40-204ENST00000563683 CAPN2P17655 700 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 MUM1L1Q5H9M0 696 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 GIGYF2Q6Y7W6 1299 aaKnown RBP11.92□□□□□ -0.5
RNF40-204ENST00000563683 KAZALD1Q96I82 304 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 TMEM87BQ96K49 555 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 TRIM75PA6NK02 468 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 PDE4BQ07343 736 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 RESTQ13127 1097 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 AK7Q96M32 723 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 SETDB2Q96T68 719 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 PDE8BO95263 885 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 BCAMP50895 628 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 GNG11P61952 73 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 PDIA6Q15084 440 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 CCDC93Q567U6 631 aa11.92□□□□□ -0.5
RNF40-204ENST00000563683 ADALQ6DHV7 355 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms