RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 MYO5AQ9Y4I1 1855 aaKnown RBP17.37■□□□□ 0.37
SMPD3-204ENST00000563396 MANSC4A6NHS7 340 aaPredicted RBP17.36■□□□□ 0.37
SMPD3-204ENST00000563396 MS4A1P11836 297 aa17.36■□□□□ 0.37
SMPD3-204ENST00000563396 PANK1Q8TE04 598 aa17.36■□□□□ 0.37
SMPD3-204ENST00000563396 GJA5P36382 358 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 TNNI3KQ59H18 835 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 CDC42EP5Q6NZY7 148 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.35■□□□□ 0.37
SMPD3-204ENST00000563396 SLC10A4Q96EP9 437 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 FAM163AQ96GL9 167 aaPredicted RBP17.35■□□□□ 0.37
SMPD3-204ENST00000563396 HMG20BQ9P0W2 317 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 FPGT-TNNI3KV9GXZ4 949 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 ATRNL1Q5VV63 1379 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 AK9Q5TCS8 1911 aa17.35■□□□□ 0.37
SMPD3-204ENST00000563396 MROH7-TTC4A0A0A0MT08 1334 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 COL2A1P02458 1487 aaPredicted RBP17.34■□□□□ 0.37
SMPD3-204ENST00000563396 MKRN3Q13064 507 aaKnown RBP17.34■□□□□ 0.37
SMPD3-204ENST00000563396 DZIP1Q86YF9 867 aaKnown RBP17.34■□□□□ 0.37
SMPD3-204ENST00000563396 SPATA5Q8NB90 893 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 FAM151AQ8WW52 585 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 HOOK2Q96ED9 719 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 ABHD8Q96I13 439 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 NEUROD6Q96NK8 337 aa17.34■□□□□ 0.37
SMPD3-204ENST00000563396 DOCK1Q14185 1865 aa17.33■□□□□ 0.37
SMPD3-204ENST00000563396 MCAMP43121 646 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 INHBEP58166 350 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 NFIAQ12857 509 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 VGLL4Q14135 290 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 SPTY2D1Q68D10 685 aaPredicted RBP17.33■□□□□ 0.36
SMPD3-204ENST00000563396 ZNF384Q8TF68 577 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 IDI2Q9BXS1 227 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 FAM198AQ9UFP1 575 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 RCAN3Q9UKA8 241 aa17.33■□□□□ 0.36
SMPD3-204ENST00000563396 TESPA1A2RU30 521 aaPredicted RBP17.32■□□□□ 0.36
SMPD3-204ENST00000563396 SURF6O75683 361 aaKnown RBP17.32■□□□□ 0.36
SMPD3-204ENST00000563396 ALDH1A1P00352 501 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 UQCRFS1P1P0C7P4 283 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 PI16Q6UXB8 463 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 SLF2Q8IX21 1173 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 ZNF512BQ96KM6 892 aaPredicted RBP17.32■□□□□ 0.36
SMPD3-204ENST00000563396 MCOLN1Q9GZU1 580 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 ABCF2Q9UG63 623 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 DDX19BQ9UMR2 479 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 SNCAIPQ9Y6H5 919 aa17.32■□□□□ 0.36
SMPD3-204ENST00000563396 SIPA1L1O43166 1804 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 SPDYE5A6NIY4 337 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 CAPN15O75808 1086 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 MAP3K9P80192 1104 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 MECOMQ03112 1051 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 GORABQ5T7V8 394 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 DCAF15Q66K64 600 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 IFNL1Q8IU54 200 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 OPTNQ96CV9 577 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 DBNDD2Q9BQY9 259 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 ELP3Q9H9T3 547 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 PTPRFP10586 1907 aa17.31■□□□□ 0.36
SMPD3-204ENST00000563396 IGF2BP3O00425 579 aaKnown RBP eCLIP17.3■□□□□ 0.36
SMPD3-204ENST00000563396 IGSF3O75054 1194 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 OS9Q13438 667 aaPredicted RBP17.3■□□□□ 0.36
SMPD3-204ENST00000563396 ERICH6Q7L0X2 663 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 NSUN4Q96CB9 384 aaKnown RBP17.3■□□□□ 0.36
SMPD3-204ENST00000563396 WRNIP1Q96S55 665 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 USP40Q9NVE5 1235 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 DBNLQ9UJU6 430 aaKnown RBP17.3■□□□□ 0.36
SMPD3-204ENST00000563396 CSADQ9Y600 493 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 PHIPQ8WWQ0 1821 aa17.3■□□□□ 0.36
SMPD3-204ENST00000563396 ATAD5Q96QE3 1844 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 GPR75-ASB3A0A0A6YYF3 556 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 ENTPD3O75355 529 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 WDHD1O75717 1129 aaPredicted RBP17.29■□□□□ 0.36
SMPD3-204ENST00000563396 BTDP43251 543 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 MS4A4AQ96JQ5 239 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 ZBTB40Q9NUA8 1239 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 ZNF112Q9UJU3 913 aa17.29■□□□□ 0.36
SMPD3-204ENST00000563396 DDX60LQ5H9U9 1706 aaKnown RBP17.28■□□□□ 0.36
SMPD3-204ENST00000563396 GPR25O00155 361 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 NPM3O75607 178 aaKnown RBP17.28■□□□□ 0.36
SMPD3-204ENST00000563396 TBC1D8O95759 1140 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 MAP4K4O95819 1239 aaPredicted RBP17.28■□□□□ 0.36
SMPD3-204ENST00000563396 RGS3P49796 1198 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 RHBDL3P58872 404 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 TCP10Q12799 353 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 DGKZQ13574 1117 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 CCDC158Q5M9N0 1113 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 ERC1Q8IUD2 1116 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 ZNF296Q8WUU4 475 aaPredicted RBP17.28■□□□□ 0.36
SMPD3-204ENST00000563396 CNKSR2Q8WXI2 1034 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 ZNF341Q9BYN7 854 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 TLR7Q9NYK1 1049 aaKnown RBP17.28■□□□□ 0.36
SMPD3-204ENST00000563396 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
SMPD3-204ENST00000563396 HTTP42858 3142 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 GSTO1P78417 241 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 PDE3AQ14432 1141 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 TTC39AQ5SRH9 613 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 NOL9Q5SY16 702 aaKnown RBP17.27■□□□□ 0.36
SMPD3-204ENST00000563396 CTU1Q7Z7A3 348 aaKnown RBP17.27■□□□□ 0.36
SMPD3-204ENST00000563396 ERO1BQ86YB8 467 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 RPAP2Q8IXW5 612 aaPredicted RBP17.27■□□□□ 0.36
SMPD3-204ENST00000563396 EAF2Q96CJ1 260 aaPredicted RBP17.27■□□□□ 0.36
SMPD3-204ENST00000563396 DDX4Q9NQI0 724 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms