RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ABT1Q9ULW3 272 aaKnown RBP10.72□□□□□ -0.69
VPS39-205ENST00000562258 CYP2D7A0A087X1C5 515 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 GOLGA6L3A6NEY3 463 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 FAM196BA6NMK8 535 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 TRIM28Q13263 835 aaKnown RBP10.71□□□□□ -0.69
VPS39-205ENST00000562258 TMX3Q96JJ7 454 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 PKD2L1Q9P0L9 805 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 FBXO3Q9UK99 471 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 ECE2O60344 883 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 NSMFQ6X4W1 530 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 SLC16A10Q8TF71 515 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 HAUS7Q99871 368 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 ALG1Q9BT22 464 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 MTFR1LQ9H019 292 aa10.71□□□□□ -0.69
VPS39-205ENST00000562258 IBTKQ9P2D0 1353 aaPredicted RBP10.71□□□□□ -0.7
VPS39-205ENST00000562258 CIAO1O76071 339 aa10.71□□□□□ -0.7
VPS39-205ENST00000562258 HMGN5P82970 282 aaKnown RBP10.71□□□□□ -0.7
VPS39-205ENST00000562258 FGAP02671 866 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 GSPT1P15170 499 aaKnown RBP10.7□□□□□ -0.7
VPS39-205ENST00000562258 AK2P54819 239 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 BRPF1P55201 1214 aaPredicted RBP10.7□□□□□ -0.7
VPS39-205ENST00000562258 IFNL3Q8IZI9 196 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 SMARCC2Q8TAQ2 1214 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 MXD3Q9BW11 206 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 GDF11O95390 407 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 CCDC125Q86Z20 511 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 CMTR1Q8N1G2 835 aaKnown RBP10.7□□□□□ -0.7
VPS39-205ENST00000562258 COA1Q9GZY4 146 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 PTH1RQ03431 593 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 ARHGEF10LQ9HCE6 1279 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 NRKQ7Z2Y5 1582 aa10.7□□□□□ -0.7
VPS39-205ENST00000562258 MCAMP43121 646 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 IRX3P78415 501 aaPredicted RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 USH1GQ495M9 461 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PRAMEF18Q5VWM3 479 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 LRRC47Q8N1G4 583 aaKnown RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 TBC1D32Q96NH3 1257 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 RNF123Q5XPI4 1314 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 SLC27A2O14975 620 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 NFKBIBQ15653 356 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 CERKLQ49MI3 558 aaPredicted RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 CNTNAP4Q9C0A0 1308 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 CEMIPQ8WUJ3 1361 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PATL2C9JE40 543 aaKnown RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 NTSR2O95665 410 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 FOXO4P98177 505 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 MECOMQ03112 1051 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 ZNF827Q17R98 1081 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 CFAP100Q494V2 611 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 CKAP2LQ8IYA6 745 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 KIFC2Q96AC6 838 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PIH1D3Q9NQM4 214 aaKnown RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 CFAP45Q9UL16 551 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 UBN2Q6ZU65 1347 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 CAMTA1Q9Y6Y1 1673 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PXDNQ92626 1479 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PARP1P09874 1014 aaKnown RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 GOLGA8HP0CJ92 632 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 HSPD1P10809 573 aaKnown RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 GNAQP50148 359 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 PODNQ7Z5L7 613 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 BMP2KQ9NSY1 1161 aaPredicted RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 IVNS1ABPQ9Y6Y0 642 aa10.69□□□□□ -0.7
VPS39-205ENST00000562258 V9GY48 417 aaPredicted RBP10.69□□□□□ -0.7
VPS39-205ENST00000562258 PPARAQ07869 468 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 GADL1Q6ZQY3 521 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 CCDC12Q8WUD4 166 aaPredicted RBP10.68□□□□□ -0.7
VPS39-205ENST00000562258 USP26Q9BXU7 913 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 UBA5Q9GZZ9 404 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 PUS7LQ9H0K6 701 aaKnown RBP10.68□□□□□ -0.7
VPS39-205ENST00000562258 FAM13BQ9NYF5 915 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 MATR3P43243 847 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS39-205ENST00000562258 C8orf34Q49A92 452 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 ANKRD20A12PQ8NF67 263 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 TBC1D16Q8TBP0 767 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 PLSCR1O15162 318 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 TPM2P07951 284 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 IDEP14735 1019 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 KIAA2012Q0VF49 1180 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 TSR1Q2NL82 804 aaKnown RBP10.68□□□□□ -0.7
VPS39-205ENST00000562258 AKNAD1Q5T1N1 836 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 LCORLQ8N3X6 602 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 DYNLL2Q96FJ2 89 aa10.68□□□□□ -0.7
VPS39-205ENST00000562258 SCARF1Q14162 830 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 CAMK4Q16566 473 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 SKOR2Q2VWA4 1001 aaPredicted RBP10.67□□□□□ -0.7
VPS39-205ENST00000562258 OTUD7BQ6GQQ9 843 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 CCDC174Q6PII3 467 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 OSBP2Q969R2 916 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 FAM84BQ96KN1 310 aaPredicted RBP10.67□□□□□ -0.7
VPS39-205ENST00000562258 ZBTB21Q9ULJ3 1066 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 SPDYE3A6NKU9 549 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 DCAF15Q66K64 600 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 SP8Q8IXZ3 490 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 PHKBQ93100 1093 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 RRP36Q96EU6 259 aaKnown RBP10.67□□□□□ -0.7
VPS39-205ENST00000562258 SH2D4AQ9H788 454 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 KDM6AO15550 1401 aaPredicted RBP10.67□□□□□ -0.7
VPS39-205ENST00000562258 CALM1P0DP23 149 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 CALM2P0DP24 149 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms