RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 KLHDC4Q8TBB5 520 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 BCL11AQ9H165 835 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 PPP4R2Q9NY27 417 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 TRMT112Q9UI30 125 aaKnown RBP6.53□□□□□ -1.36
SPG11-220ENST00000559933 CDV3Q9UKY7 258 aaKnown RBP6.53□□□□□ -1.36
SPG11-220ENST00000559933 COL11A2P13942 1736 aaPredicted RBP6.53□□□□□ -1.36
SPG11-220ENST00000559933 UTYO14607 1347 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 TAF1P21675 1872 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 ANKRD31Q8N7Z5 1873 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 APBB1O00213 710 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 POLRMTO00411 1230 aaKnown RBP6.52□□□□□ -1.37
SPG11-220ENST00000559933 WFS1O76024 890 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 GNAI2P04899 355 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 PCCAP05165 728 aaPredicted RBP6.52□□□□□ -1.37
SPG11-220ENST00000559933 GNAI3P08754 354 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 MMP10P09238 476 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 GRM5P41594 1212 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 FOXO4P98177 505 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 CCDC125Q86Z20 511 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 ZBTB38Q8NAP3 1195 aaPredicted RBP6.52□□□□□ -1.37
SPG11-220ENST00000559933 CCDC191Q8NCU4 936 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 UTP14AQ9BVJ6 771 aaKnown RBP6.52□□□□□ -1.37
SPG11-220ENST00000559933 PA2G4Q9UQ80 394 aaKnown RBP6.52□□□□□ -1.37
SPG11-220ENST00000559933 ZNF652Q9Y2D9 606 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 CHMP3Q9Y3E7 222 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 GPSM3Q9Y4H4 160 aa6.52□□□□□ -1.37
SPG11-220ENST00000559933 KDM2BQ8NHM5 1336 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 LRP5O75197 1615 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 NRXN2Q9P2S2 1712 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 MYH3P11055 1940 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 IRS4O14654 1257 aaPredicted RBP6.51□□□□□ -1.37
SPG11-220ENST00000559933 NR3C2P08235 984 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 HSP90AB3PQ58FF7 597 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 PRR5LQ6MZQ0 368 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 LMBR1LQ6UX01 489 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 CLEC4GQ6UXB4 293 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 PPP1R42Q7Z4L9 355 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 NBPF5PQ86XG9 351 aaPredicted RBP6.51□□□□□ -1.37
SPG11-220ENST00000559933 CCDC116Q8IYX3 515 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 SLC16A10Q8TF71 515 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 ITPKCQ96DU7 683 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 ZNF594Q96JF6 807 aaPredicted RBP6.51□□□□□ -1.37
SPG11-220ENST00000559933 CCDC136Q96JN2 1154 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 ZFP42Q96MM3 310 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 PURBQ96QR8 312 aaKnown RBP6.51□□□□□ -1.37
SPG11-220ENST00000559933 SETDB2Q96T68 719 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 PGPEP1Q9NXJ5 209 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 EXOC6BQ9Y2D4 811 aa6.51□□□□□ -1.37
SPG11-220ENST00000559933 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.51□□□□□ -1.37
SPG11-220ENST00000559933 SH3TC1Q8TE82 1336 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 SRGAP3O43295 1099 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 SMARCA5O60264 1052 aaPredicted RBP6.5□□□□□ -1.37
SPG11-220ENST00000559933 SERPINB2P05120 415 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 TM4SF1P30408 202 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 CTSWP56202 376 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 DHX9Q08211 1270 aaKnown RBP6.5□□□□□ -1.37
SPG11-220ENST00000559933 TRIM28Q13263 835 aaKnown RBP6.5□□□□□ -1.37
SPG11-220ENST00000559933 PARP10Q53GL7 1025 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 CNBD1Q8NA66 436 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 SIL1Q9H173 461 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 GREM2Q9H772 168 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 ZFAND3Q9H8U3 227 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 SEC31BQ9NQW1 1179 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 WWC3Q9ULE0 1092 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 CDHR2Q9BYE9 1310 aa6.5□□□□□ -1.37
SPG11-220ENST00000559933 CACNA1SQ13698 1873 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 IBTKQ9P2D0 1353 aaPredicted RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 TERTO14746 1132 aaKnown RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 NPHP1O15259 732 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 BMP2P12643 396 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 RFX5P48382 616 aaPredicted RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 ATP8B2P98198 1209 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 NBPF20Q3BBV1 942 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 RABL6Q3YEC7 729 aaPredicted RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 C6orf118Q5T5N4 469 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 FLAD1Q8NFF5 587 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 KCTD15Q96SI1 283 aaPredicted RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 KLF16Q9BXK1 252 aaPredicted RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 PUS3Q9BZE2 481 aaKnown RBP6.49□□□□□ -1.37
SPG11-220ENST00000559933 RIC1Q4ADV7 1423 aa6.49□□□□□ -1.37
SPG11-220ENST00000559933 KIAA1551Q9HCM1 1747 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 GOLGB1Q14789 3259 aaKnown RBP6.48□□□□□ -1.37
SPG11-220ENST00000559933 PDE8AO60658 829 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 GTF2E1P29083 439 aaPredicted RBP6.48□□□□□ -1.37
SPG11-220ENST00000559933 HDAC1Q13547 482 aaPredicted RBP6.48□□□□□ -1.37
SPG11-220ENST00000559933 LRRC24Q50LG9 513 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 TTLL11Q8NHH1 800 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 ADAM32Q8TC27 787 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 OTUD7AQ8TE49 926 aaPredicted RBP6.48□□□□□ -1.37
SPG11-220ENST00000559933 SSH3Q8TE77 659 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 PLA2G12BQ9BX93 195 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 HMX1Q9NP08 348 aaPredicted RBP6.48□□□□□ -1.37
SPG11-220ENST00000559933 A0A1B0GUL6 1792 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 C10orf71Q711Q0 1435 aa6.48□□□□□ -1.37
SPG11-220ENST00000559933 MAN1A2O60476 641 aa6.47□□□□□ -1.37
SPG11-220ENST00000559933 SURF6O75683 361 aaKnown RBP6.47□□□□□ -1.37
SPG11-220ENST00000559933 CSF1RP07333 972 aa6.47□□□□□ -1.37
SPG11-220ENST00000559933 ITGA6P23229 1130 aa6.47□□□□□ -1.37
SPG11-220ENST00000559933 CHRNA5P30532 468 aa6.47□□□□□ -1.37
SPG11-220ENST00000559933 ST5P78524 1137 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms