RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 SEMA3EO15041 775 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 TOB2Q14106 344 aaPredicted RBP21.05■□□□□ 0.96
SNX1-208ENST00000559844 SLFNL1Q499Z3 407 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 PI16Q6UXB8 463 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 JAG2Q9Y219 1238 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 C9orf131Q5VYM1 1079 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 KCNQ5Q9NR82 932 aa21.05■□□□□ 0.96
SNX1-208ENST00000559844 ZNF646O15015 1829 aaPredicted RBP21.04■□□□□ 0.96
SNX1-208ENST00000559844 MYH7P12883 1935 aa21.04■□□□□ 0.96
SNX1-208ENST00000559844 STX6O43752 255 aa21.04■□□□□ 0.96
SNX1-208ENST00000559844 CHAF1AQ13111 956 aaPredicted RBP21.04■□□□□ 0.96
SNX1-208ENST00000559844 FOXD4L5Q5VV16 416 aaPredicted RBP21.04■□□□□ 0.96
SNX1-208ENST00000559844 SPATA5Q8NB90 893 aa21.04■□□□□ 0.96
SNX1-208ENST00000559844 FOXD4L4Q8WXT5 416 aaPredicted RBP21.04■□□□□ 0.96
SNX1-208ENST00000559844 FBXW7Q969H0 707 aa21.04■□□□□ 0.96
SNX1-208ENST00000559844 DENND2AQ9ULE3 1009 aa21.04■□□□□ 0.96
SNX1-208ENST00000559844 MYO5AQ9Y4I1 1855 aaKnown RBP21.04■□□□□ 0.96
SNX1-208ENST00000559844 ZSCAN22P10073 491 aaPredicted RBP21.03■□□□□ 0.96
SNX1-208ENST00000559844 GJB2P29033 226 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 FSD2A1L4K1 749 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 SYT1P21579 422 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 ADD2P35612 726 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 GTF2IP78347 998 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 UBE3CQ15386 1083 aa21.03■□□□□ 0.96
SNX1-208ENST00000559844 PRPF40AO75400 957 aaKnown RBP21.02■□□□□ 0.96
SNX1-208ENST00000559844 ST3GAL1Q11201 340 aa21.02■□□□□ 0.96
SNX1-208ENST00000559844 DHX32Q7L7V1 743 aaKnown RBP21.02■□□□□ 0.96
SNX1-208ENST00000559844 ATP6V1DQ9Y5K8 247 aa21.02■□□□□ 0.96
SNX1-208ENST00000559844 RAD17O75943 681 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 TTLL5Q6EMB2 1281 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 Q6ZUG5 572 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 NECAB1Q8N987 351 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 TCEANC2Q96MN5 208 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 FZD9O00144 591 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 IMMTQ16891 758 aaKnown RBP21.01■□□□□ 0.95
SNX1-208ENST00000559844 STOX1Q6ZVD7 989 aa21.01■□□□□ 0.95
SNX1-208ENST00000559844 PDS5AQ29RF7 1337 aaKnown RBP21■□□□□ 0.95
SNX1-208ENST00000559844 USP17L3A6NCW0 530 aa21■□□□□ 0.95
SNX1-208ENST00000559844 USP17L4A6NCW7 530 aa21■□□□□ 0.95
SNX1-208ENST00000559844 ZBTB22O15209 634 aa21■□□□□ 0.95
SNX1-208ENST00000559844 COL9A3Q14050 684 aaPredicted RBP21■□□□□ 0.95
SNX1-208ENST00000559844 SLC9C2Q5TAH2 1124 aa21■□□□□ 0.95
SNX1-208ENST00000559844 USP17L1Q7RTZ2 530 aa21■□□□□ 0.95
SNX1-208ENST00000559844 PIH1D3Q9NQM4 214 aaKnown RBP21■□□□□ 0.95
SNX1-208ENST00000559844 FAM205AQ6ZU69 1335 aa21■□□□□ 0.95
SNX1-208ENST00000559844 E7EWF7 191 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 GPAA1O43292 621 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 PDCP20941 246 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 EIF6P56537 245 aaKnown RBP20.99■□□□□ 0.95
SNX1-208ENST00000559844 CXCL9Q07325 125 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 STRIP1Q5VSL9 837 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 PUS7LQ9H0K6 701 aaKnown RBP20.99■□□□□ 0.95
SNX1-208ENST00000559844 MBD3O95983 291 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 FGD1P98174 961 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 WDR66Q8TBY9 1149 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 DOCK2Q92608 1830 aa20.99■□□□□ 0.95
SNX1-208ENST00000559844 ZNF541Q9H0D2 1346 aa20.98■□□□□ 0.95
SNX1-208ENST00000559844 PSMD14O00487 310 aa20.98■□□□□ 0.95
SNX1-208ENST00000559844 IDH1O75874 414 aaKnown RBP20.98■□□□□ 0.95
SNX1-208ENST00000559844 F13A1P00488 732 aa20.98■□□□□ 0.95
SNX1-208ENST00000559844 MFSD14BQ5SR56 506 aa20.98■□□□□ 0.95
SNX1-208ENST00000559844 CIAPIN1Q6FI81 312 aa20.98■□□□□ 0.95
SNX1-208ENST00000559844 EXOSC10Q01780 885 aaKnown RBP20.97■□□□□ 0.95
SNX1-208ENST00000559844 DACT2Q5SW24 774 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 MXD3Q9BW11 206 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 ABCF2Q9UG63 623 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 LAMA4Q16363 1823 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 PDE6AP16499 860 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 MAP3K12Q12852 859 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 TBC1D22AQ8WUA7 517 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 GTF3C6Q969F1 213 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 CHMP4CQ96CF2 233 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 AGXT2Q9BYV1 514 aa20.97■□□□□ 0.95
SNX1-208ENST00000559844 NCLP19338 710 aaKnown RBP20.96■□□□□ 0.95
SNX1-208ENST00000559844 MRE11P49959 708 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 TNIP1Q15025 636 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 ZNF532Q9HCE3 1301 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 FOXP2O15409 715 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 FGAP02671 866 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 FBXL16Q8N461 479 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 CERS5Q8N5B7 392 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 BRF1Q92994 677 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 MTMR6Q9Y217 621 aa20.96■□□□□ 0.95
SNX1-208ENST00000559844 SALL1Q9NSC2 1324 aa20.95■□□□□ 0.94
SNX1-208ENST00000559844 VIL1P09327 827 aaKnown RBP20.95■□□□□ 0.94
SNX1-208ENST00000559844 LARP1BQ659C4 914 aaKnown RBP20.95■□□□□ 0.94
SNX1-208ENST00000559844 TMEM87AQ8NBN3 555 aa20.95■□□□□ 0.94
SNX1-208ENST00000559844 GJA3Q9Y6H8 435 aa20.95■□□□□ 0.94
SNX1-208ENST00000559844 TCRBV5S4A2TA0A5A2 114 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 STK3Q13188 491 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 LLPHQ9BRT6 129 aaKnown RBP20.94■□□□□ 0.94
SNX1-208ENST00000559844 LRP2BPQ9P2M1 347 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 ZC3H4Q9UPT8 1303 aaKnown RBP20.94■□□□□ 0.94
SNX1-208ENST00000559844 ZNF213O14771 459 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 PFKFB2O60825 505 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 PRDX5P30044 214 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 CSPP1Q1MSJ5 1256 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 RSBN1LQ6PCB5 846 aaPredicted RBP20.94■□□□□ 0.94
SNX1-208ENST00000559844 GPT2Q8TD30 523 aa20.94■□□□□ 0.94
SNX1-208ENST00000559844 ZBTB12Q9Y330 459 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms