RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TMED8Q6PL24 325 aaPredicted RBP11.57□□□□□ -0.56
CUX1-216ENST00000558469 HHIPL2Q6UWX4 724 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 MICALL2Q8IY33 904 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 MIGA1Q8NAN2 632 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 RUFY2Q8WXA3 655 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 APPBP2Q92624 585 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 OSBP2Q969R2 916 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 NOL10Q9BSC4 688 aaKnown RBP11.57□□□□□ -0.56
CUX1-216ENST00000558469 MRIQ9BWK5 157 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 PUS7LQ9H0K6 701 aaKnown RBP11.57□□□□□ -0.56
CUX1-216ENST00000558469 HELLSQ9NRZ9 838 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 CNOT7Q9UIV1 285 aaKnown RBP11.57□□□□□ -0.56
CUX1-216ENST00000558469 SERPINA10Q9UK55 444 aa11.57□□□□□ -0.56
CUX1-216ENST00000558469 MAGEB6P1A0A0J9YX57 407 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 GLTPD2A6NH11 291 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 DYNLL1P63167 89 aaKnown RBP11.56□□□□□ -0.56
CUX1-216ENST00000558469 CFAP100Q494V2 611 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 MCMDC2Q4G0Z9 681 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 CCDC129Q6ZRS4 1044 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 AIDAQ96BJ3 306 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 FAM163AQ96GL9 167 aaPredicted RBP11.56□□□□□ -0.56
CUX1-216ENST00000558469 WDR90Q96KV7 1748 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 AATFQ9NY61 560 aaKnown RBP eCLIP11.56□□□□□ -0.563e-6■■■□□ 18.2
CUX1-216ENST00000558469 GPRC5DQ9NZD1 345 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 DAGLAQ9Y4D2 1042 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 PCDHAC2Q9Y5I4 1007 aa11.56□□□□□ -0.56
CUX1-216ENST00000558469 NAV1Q8NEY1 1877 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 GPR75-ASB3A0A0A6YYF3 556 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 H7C1D1 291 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 MBD4O95243 580 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 BAG3O95817 575 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 LMOD1P29536 600 aaPredicted RBP11.55□□□□□ -0.56
CUX1-216ENST00000558469 EPS15P42566 896 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 BTDP43251 543 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 MMP14P50281 582 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 ZNF280AP59817 542 aaPredicted RBP11.55□□□□□ -0.56
CUX1-216ENST00000558469 DLGAP5Q15398 846 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 C8orf34Q49A92 452 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 RBM26Q5T8P6 1007 aaKnown RBP11.55□□□□□ -0.56
CUX1-216ENST00000558469 ZDHHC15Q96MV8 337 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 ESYT1Q9BSJ8 1104 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 IL25Q9H293 177 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 ARMT1Q9H993 441 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 MYOZ2Q9NPC6 264 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 GAKO14976 1311 aa11.55□□□□□ -0.56
CUX1-216ENST00000558469 SGSM2O43147 1006 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 GPAA1O43292 621 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 MFAP1P55081 439 aaKnown RBP11.54□□□□□ -0.56
CUX1-216ENST00000558469 TBC1D10BQ4KMP7 808 aaPredicted RBP11.54□□□□□ -0.56
CUX1-216ENST00000558469 SAMD7Q7Z3H4 446 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 ZNF589Q86UQ0 364 aaPredicted RBP11.54□□□□□ -0.56
CUX1-216ENST00000558469 LCORLQ8N3X6 602 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 SH3RF3Q8TEJ3 882 aaPredicted RBP11.54□□□□□ -0.56
CUX1-216ENST00000558469 RIOK1Q9BRS2 568 aaKnown RBP11.54□□□□□ -0.56
CUX1-216ENST00000558469 CCDC171Q6TFL3 1326 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 RAD50Q92878 1312 aa11.54□□□□□ -0.56
CUX1-216ENST00000558469 EGFRP00533 1210 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 PPP4CP60510 307 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 APOBEC3HQ6NTF7 200 aaKnown RBP11.53□□□□□ -0.56
CUX1-216ENST00000558469 MTMR14Q8NCE2 650 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 L3MBTL3Q96JM7 780 aaPredicted RBP11.53□□□□□ -0.56
CUX1-216ENST00000558469 PRMT6Q96LA8 375 aaPredicted RBP11.53□□□□□ -0.56
CUX1-216ENST00000558469 STRBPQ96SI9 672 aaKnown RBP11.53□□□□□ -0.56
CUX1-216ENST00000558469 TDRD3Q9H7E2 651 aaKnown RBP11.53□□□□□ -0.56
CUX1-216ENST00000558469 USP40Q9NVE5 1235 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 HACL1Q9UJ83 578 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 SLC4A4Q9Y6R1 1079 aa11.53□□□□□ -0.56
CUX1-216ENST00000558469 LAMB1P07942 1786 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 HAX1O00165 279 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 APPP05067 770 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 PLCG2P16885 1265 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 RHBDL3P58872 404 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 KIF4BQ2VIQ3 1234 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 NBPF9Q3BBW0 867 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 CDC42EP5Q6NZY7 148 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 KIAA1211Q6ZU35 1233 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 CERS3Q8IU89 383 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 TEX11Q8IYF3 940 aa11.52□□□□□ -0.57
CUX1-216ENST00000558469 CRNKL1Q9BZJ0 848 aaKnown RBP11.52□□□□□ -0.57
CUX1-216ENST00000558469 LAMA4Q16363 1823 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 MYH8P13535 1937 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 CLRN2A0PK11 232 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 WNT10BO00744 389 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 PRKAB2O43741 272 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 MYO1BO43795 1136 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 SEC24BO95487 1268 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 GNAT2P19087 354 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 USP5P45974 858 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 PTH1RQ03431 593 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 VPS53Q5VIR6 699 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 TRPM4Q8TD43 1214 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 ZNF526Q8TF50 670 aaPredicted RBP11.51□□□□□ -0.57
CUX1-216ENST00000558469 TGFBRAP1Q8WUH2 860 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 SDR42E1Q8WUS8 393 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 ZBED3Q96IU2 234 aaPredicted RBP11.51□□□□□ -0.57
CUX1-216ENST00000558469 ANO2Q9NQ90 1003 aa11.51□□□□□ -0.57
CUX1-216ENST00000558469 ADARB2Q9NS39 739 aaKnown RBP11.51□□□□□ -0.57
CUX1-216ENST00000558469 DDX60LQ5H9U9 1706 aaKnown RBP11.5□□□□□ -0.57
CUX1-216ENST00000558469 IQCA1LA6NCM1 817 aa11.5□□□□□ -0.57
CUX1-216ENST00000558469 GSG1L2A8MUP6 293 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms