RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CPLX2Q6PUV4 134 aaKnown RBP18.8■□□□□ 0.6
SHMT2-232ENST00000557487 CCDC9Q9Y3X0 531 aaKnown RBP18.8■□□□□ 0.6
SHMT2-232ENST00000557487 MAP3K15Q6ZN16 1313 aa18.8■□□□□ 0.6
SHMT2-232ENST00000557487 CHST3Q7LGC8 479 aa18.8■□□□□ 0.6
SHMT2-232ENST00000557487 ERCC4Q92889 916 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-232ENST00000557487 SOCS7O14512 581 aa18.79■□□□□ 0.6
SHMT2-232ENST00000557487 TTC39AQ5SRH9 613 aa18.79■□□□□ 0.6
SHMT2-232ENST00000557487 TTLL5Q6EMB2 1281 aa18.79■□□□□ 0.6
SHMT2-232ENST00000557487 HOMER1Q86YM7 354 aa18.79■□□□□ 0.6
SHMT2-232ENST00000557487 NOL10Q9BSC4 688 aaKnown RBP18.79■□□□□ 0.6
SHMT2-232ENST00000557487 ZMYM6O95789 1325 aa18.79■□□□□ 0.6
SHMT2-232ENST00000557487 A0A0G2JLW4 131 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 ZNF213O14771 459 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 FGAP02671 866 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 UBASH3AP57075 661 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 OLFM4Q6UX06 510 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.78■□□□□ 0.6
SHMT2-232ENST00000557487 DNAI1Q9UI46 699 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 HOOK1Q9UJC3 728 aaKnown RBP18.78■□□□□ 0.6
SHMT2-232ENST00000557487 V9GYY5 206 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-232ENST00000557487 CYP27B1O15528 508 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 TRDNQ13061 729 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 WASHC4Q2M389 1173 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 VSTM4Q8IW00 320 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 UBXN4Q92575 508 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 FBXW7Q969H0 707 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.78■□□□□ 0.6
SHMT2-232ENST00000557487 WDR17Q8IZU2 1322 aa18.78■□□□□ 0.6
SHMT2-232ENST00000557487 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-232ENST00000557487 ERCC6LQ2NKX8 1250 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 LRRC24Q50LG9 513 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 GORABQ5T7V8 394 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 OTUD7BQ6GQQ9 843 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 MPHOSPH8Q99549 860 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.77■□□□□ 0.66e-7■■□□□ 14.2
SHMT2-232ENST00000557487 ZNF446Q9NWS9 450 aa18.77■□□□□ 0.6
SHMT2-232ENST00000557487 THRAP3Q9Y2W1 955 aaKnown RBP18.77■□□□□ 0.6
SHMT2-232ENST00000557487 C4AP0C0L4 1744 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 C4BP0C0L5 1744 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 EFCAB8A8MWE9 144 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 KIF28PB7ZC32 967 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 BIN1O00499 593 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 FOXP2O15409 715 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 ARHGAP6O43182 974 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 CUTAO60888 179 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 SERPINC1P01008 464 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 LMOD1P29536 600 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-232ENST00000557487 ANTXR2P58335 489 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 FKBP4Q02790 459 aaKnown RBP eCLIP18.76■□□□□ 0.59
SHMT2-232ENST00000557487 RESP18Q5W5W9 173 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 BARGINQ6ZT62 677 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 ANGEL1Q9UNK9 670 aaKnown RBP18.76■□□□□ 0.59
SHMT2-232ENST00000557487 NBPF26B4DH59 902 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 PIP4K2AP48426 406 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-232ENST00000557487 CCDC57Q2TAC2 916 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 NBPF14Q5TI25 921 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 NBPF10Q6P3W6 841 aaKnown RBP18.76■□□□□ 0.59
SHMT2-232ENST00000557487 NBPF15Q8N660 670 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 MNS1Q8NEH6 495 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 HSD3B7Q9H2F3 369 aa18.76■□□□□ 0.59
SHMT2-232ENST00000557487 WDHD1O75717 1129 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-232ENST00000557487 TOP1P11387 765 aaKnown RBP18.75■□□□□ 0.59
SHMT2-232ENST00000557487 CLCN6P51797 869 aa18.75■□□□□ 0.59
SHMT2-232ENST00000557487 ARHGAP29Q52LW3 1261 aa18.75■□□□□ 0.59
SHMT2-232ENST00000557487 TMCO3Q6UWJ1 677 aa18.75■□□□□ 0.59
SHMT2-232ENST00000557487 ALG1Q9BT22 464 aa18.75■□□□□ 0.59
SHMT2-232ENST00000557487 MROH7-TTC4A0A0A0MT08 1334 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 CSB-PGBD3P0DP91 1061 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 PTPAQ15257 358 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 CCDC102BQ68D86 513 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 TRIM65Q6PJ69 517 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 VPS37DQ86XT2 251 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 SEPT12Q8IYM1 358 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 XAGE2Q96GT9 111 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 TMEM87BQ96K49 555 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 ZNF512BQ96KM6 892 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-232ENST00000557487 GPHNQ9NQX3 736 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-232ENST00000557487 DACH1Q9UI36 760 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 FHOD1Q9Y613 1164 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 IGSF3O75054 1194 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 METAP2P50579 478 aaKnown RBP eCLIP18.74■□□□□ 0.591e-6■■■□□ 16.1
SHMT2-232ENST00000557487 FAM98CQ17RN3 349 aaKnown RBP18.74■□□□□ 0.59
SHMT2-232ENST00000557487 CFAP100Q494V2 611 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 PLA2G12BQ9BX93 195 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 CALCOCO1Q9P1Z2 691 aa18.74■□□□□ 0.59
SHMT2-232ENST00000557487 STK36Q9NRP7 1315 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 TADA3O75528 432 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 ZRANB2O95218 330 aaKnown RBP eCLIP18.73■□□□□ 0.591e-7■□□□□ 9.4
SHMT2-232ENST00000557487 HAND2P61296 217 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 TRIM29Q14134 588 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 TTF1Q15361 905 aaPredicted RBP18.73■□□□□ 0.59
SHMT2-232ENST00000557487 REXO1L1PQ8IX06 675 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 CARD10Q9BWT7 1032 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 UBR2Q8IWV8 1755 aa18.73■□□□□ 0.59
SHMT2-232ENST00000557487 ERVV-2B6SEH9 535 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 GPAA1O43292 621 aa18.72■□□□□ 0.59
SHMT2-232ENST00000557487 PNMA6AP0CW24 399 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-232ENST00000557487 TRIM28Q13263 835 aaKnown RBP18.72■□□□□ 0.59
SHMT2-232ENST00000557487 GNL2Q13823 731 aaKnown RBP18.72■□□□□ 0.59
SHMT2-232ENST00000557487 KRT40Q6A162 431 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms