RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 FAM184AQ8NB25 1140 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 SMARCC2Q8TAQ2 1214 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 SYAP1Q96A49 352 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-229ENST00000557348 ARMT1Q9H993 441 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 MTMR6Q9Y217 621 aa14.84□□□□□ -0.03
SHMT2-229ENST00000557348 MAST2Q6P0Q8 1798 aa14.83□□□□□ -0.03
SHMT2-229ENST00000557348 IRS2Q9Y4H2 1338 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 PDE6BP35913 854 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 DDR1Q08345 913 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 AKNAD1Q5T1N1 836 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 SMAP1Q8IYB5 467 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-229ENST00000557348 CCDC24Q8N4L8 307 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 STAG1Q8WVM7 1258 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 ANAPC4Q9UJX5 808 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 GGA1Q9UJY5 639 aa14.83□□□□□ -0.04
SHMT2-229ENST00000557348 ANGEL1Q9UNK9 670 aaKnown RBP14.83□□□□□ -0.04
SHMT2-229ENST00000557348 VPS37CA5D8V6 355 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 PDIA3P30101 505 aaKnown RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 APOBRQ0VD83 1088 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 SCRN1Q12765 414 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 STK3Q13188 491 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 MFSD6Q6ZSS7 791 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 LCORLQ8N3X6 602 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 TDRD7Q8NHU6 1098 aaKnown RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 CRNKL1Q9BZJ0 848 aaKnown RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 TMX4Q9H1E5 349 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 ZSCAN16Q9H4T2 348 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 IQSEC3Q9UPP2 1182 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-229ENST00000557348 PARP3Q9Y6F1 533 aa14.82□□□□□ -0.04
SHMT2-229ENST00000557348 NRXN2Q9P2S2 1712 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 PRPF40AO75400 957 aaKnown RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 CDKL5O76039 1030 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 NPR1P16066 1061 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 ALDH1B1P30837 517 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 RCAN1P53805 252 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 ZNF827Q17R98 1081 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 CPLX2Q6PUV4 134 aaKnown RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 TBC1D10CQ8IV04 446 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 TMTC2Q8N394 836 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 NSUN4Q96CB9 384 aaKnown RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 RIOK1Q9BRS2 568 aaKnown RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 EPB41L4AQ9HCS5 686 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 LDHCP07864 332 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 LIFRP42702 1097 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 GAS2L3Q86XJ1 694 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 SP8Q8IXZ3 490 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 NSUN7Q8NE18 718 aaKnown RBP14.81□□□□□ -0.04
SHMT2-229ENST00000557348 ATP8A2Q9NTI2 1148 aa14.81□□□□□ -0.04
SHMT2-229ENST00000557348 ERICH2A1L162 156 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 H3BQV1 296 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 KRT85P78386 507 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 COL9A3Q14050 684 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 IFFO2Q5TF58 517 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 FOXD4L5Q5VV16 416 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 SGMS1Q86VZ5 419 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 COL23A1Q86Y22 540 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 DZIP1Q86YF9 867 aaKnown RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 SLF2Q8IX21 1173 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 TBC1D22AQ8WUA7 517 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 FOXD4L4Q8WXT5 416 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 NOL10Q9BSC4 688 aaKnown RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 LRRC2Q9BYS8 371 aa14.8□□□□□ -0.04
SHMT2-229ENST00000557348 TNS1Q9HBL0 1735 aaKnown RBP14.8□□□□□ -0.04
SHMT2-229ENST00000557348 CACNA1SQ13698 1873 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 LRRC37AA6NMS7 1700 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 A0A0G2JLW4 131 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 KLF18A0A0U1RQI7 1052 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 PTPDC1A2A3K4 754 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 GOLGA8BA8MQT2 603 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 SH2B2O14492 632 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 CPLX1O14810 134 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 PPEF1O14829 653 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 UFL1O94874 794 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 LDHBP07195 334 aaKnown RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 SLC3A2P08195 630 aaKnown RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 ANTXR2P58335 489 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 MECOMQ03112 1051 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 PPARAQ07869 468 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 ATL3Q6DD88 541 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 MIGA1Q8NAN2 632 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 NBPF3Q9H094 633 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 NAP1L2Q9ULW6 460 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 NSFL1CQ9UNZ2 370 aaKnown RBP14.79□□□□□ -0.04
SHMT2-229ENST00000557348 TAF1P21675 1872 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 MYH13Q9UKX3 1938 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 KIAA1551Q9HCM1 1747 aa14.79□□□□□ -0.04
SHMT2-229ENST00000557348 MYO5AQ9Y4I1 1855 aaKnown RBP14.78□□□□□ -0.04
SHMT2-229ENST00000557348 BAG3O95817 575 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 IL1R1P14778 569 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 KLRK1P26718 216 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 GPSM2P81274 684 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 CHAF1AQ13111 956 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-229ENST00000557348 SYNE3Q6ZMZ3 975 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 ESR2Q92731 530 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 SCAND2PQ9GZW5 306 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-229ENST00000557348 ARPP21Q9UBL0 812 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-229ENST00000557348 CCDC39Q9UFE4 941 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 ATP6V0A2Q9Y487 856 aa14.78□□□□□ -0.04
SHMT2-229ENST00000557348 UBE2HP62256 183 aa14.77□□□□□ -0.04
SHMT2-229ENST00000557348 PPP2R5BQ15173 497 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms