RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 BTDP43251 543 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 TNNI2P48788 182 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 CACNB3P54284 484 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 MAP3K12Q12852 859 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 RASA3Q14644 834 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 FKBP1CQ5VVH2 108 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 HAUS7Q99871 368 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 ANTXR1Q9H6X2 564 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 GBA2Q9HCG7 927 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-228ENST00000557302 USP40Q9NVE5 1235 aa16.53■□□□□ 0.24
SHMT2-228ENST00000557302 TRPM7Q96QT4 1865 aa16.52■□□□□ 0.24
SHMT2-228ENST00000557302 GPR75-ASB3A0A0A6YYF3 556 aa16.52■□□□□ 0.24
SHMT2-228ENST00000557302 NF2P35240 595 aa16.52■□□□□ 0.24
SHMT2-228ENST00000557302 C2orf69Q8N8R5 385 aa16.52■□□□□ 0.24
SHMT2-228ENST00000557302 NOL10Q9BSC4 688 aaKnown RBP16.52■□□□□ 0.24
SHMT2-228ENST00000557302 PAG1Q9NWQ8 432 aa16.52■□□□□ 0.24
SHMT2-228ENST00000557302 TTC41PQ6P2S7 1318 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 MX1P20591 662 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 TSHZ3Q63HK5 1081 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 B4GALNT3Q6L9W6 998 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 TMED8Q6PL24 325 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-228ENST00000557302 OTUD7AQ8TE49 926 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-228ENST00000557302 KLRG1Q96E93 195 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 TLL2Q9Y6L7 1015 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 MYH2Q9UKX2 1941 aa16.51■□□□□ 0.23
SHMT2-228ENST00000557302 ERC2O15083 957 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 FKBP1BP68106 108 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 SUPT20HL1Q3ZLR7 823 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 FAM83AQ86UY5 434 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 MAGEB6Q8N7X4 407 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 EDC3Q96F86 508 aaKnown RBP16.5■□□□□ 0.23
SHMT2-228ENST00000557302 LNPKQ9C0E8 428 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 TMEM39BQ9GZU3 492 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 RNF216Q9NWF9 866 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-228ENST00000557302 MAST2Q6P0Q8 1798 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 CNTNAP1P78357 1384 aa16.5■□□□□ 0.23
SHMT2-228ENST00000557302 RASSF10A6NK89 507 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 BAG3O95817 575 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 MAP4K4O95819 1239 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-228ENST00000557302 CYP7A1P22680 504 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 HUNKP57058 714 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 NUCB1Q02818 461 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 NFIAQ12857 509 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 TTLL12Q14166 644 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-228ENST00000557302 IFFO2Q5TF58 517 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 SAPCD2Q86UD0 394 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 JMYQ8N9B5 988 aa16.49■□□□□ 0.23
SHMT2-228ENST00000557302 MKRN1Q9UHC7 482 aaKnown RBP16.49■□□□□ 0.23
SHMT2-228ENST00000557302 SALL3Q9BXA9 1300 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 GLRX3O76003 335 aaKnown RBP16.48■□□□□ 0.23
SHMT2-228ENST00000557302 NEFLP07196 543 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 PLCG2P16885 1265 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 RHBDL3P58872 404 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 DEFB115Q30KQ5 88 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 NBPF12Q5TAG4 269 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-228ENST00000557302 SLC9C2Q5TAH2 1124 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 ADGRA1Q86SQ6 560 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 CHD1LQ86WJ1 897 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 TEPSINQ96N21 525 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 IDI2Q9BXS1 227 aa16.48■□□□□ 0.23
SHMT2-228ENST00000557302 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.48■□□□□ 0.231e-6■■□□□ 11.9
SHMT2-228ENST00000557302 AATFQ9NY61 560 aaKnown RBP eCLIP16.48■□□□□ 0.23
SHMT2-228ENST00000557302 PPP1R12BO60237 982 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-228ENST00000557302 WDHD1O75717 1129 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PDE6AP16499 860 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 RGS3P49796 1198 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PPP4CP60510 307 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 TCP10Q12799 353 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PRKG1Q13976 671 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PAXIP1Q6ZW49 1069 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PI4K2BQ8TCG2 481 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 FAM151AQ8WW52 585 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 HHIPL1Q96JK4 782 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 FAM198AQ9UFP1 575 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 RFX7Q2KHR2 1363 aa16.47■□□□□ 0.23
SHMT2-228ENST00000557302 RPAP1Q9BWH6 1393 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-228ENST00000557302 PAPPA2Q9BXP8 1791 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 ENTPD3O75355 529 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 ARMC9Q7Z3E5 817 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 CERS3Q8IU89 383 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 CDAN1Q8IWY9 1227 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 TEX11Q8IYF3 940 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 SH3RF3Q8TEJ3 882 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-228ENST00000557302 HOOK2Q96ED9 719 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 STAP2Q9UGK3 403 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 DOCK2Q92608 1830 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 SSC5DA1L4H1 1573 aa16.46■□□□□ 0.23
SHMT2-228ENST00000557302 UBE2Q2LH0YL09 131 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 NPM3O75607 178 aaKnown RBP16.45■□□□□ 0.22
SHMT2-228ENST00000557302 PDE1AP54750 535 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 PICALMQ13492 652 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 MOB2Q70IA6 237 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 MIGA1Q8NAN2 632 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 DDX4Q9NQI0 724 aaKnown RBP16.45■□□□□ 0.22
SHMT2-228ENST00000557302 ANGEL1Q9UNK9 670 aaKnown RBP16.45■□□□□ 0.22
SHMT2-228ENST00000557302 MYO5AQ9Y4I1 1855 aaKnown RBP16.45■□□□□ 0.22
SHMT2-228ENST00000557302 ZNF532Q9HCE3 1301 aa16.45■□□□□ 0.22
SHMT2-228ENST00000557302 ECE1P42892 770 aa16.44■□□□□ 0.22
SHMT2-228ENST00000557302 IREB2P48200 963 aaKnown RBP16.44■□□□□ 0.22
SHMT2-228ENST00000557302 VEGFBP49765 207 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms