RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 RECKO95980 971 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 ADH5P11766 374 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 VAMP1P23763 118 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 UVSSAQ2YD98 709 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 ARMC10Q8N2F6 343 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 GRIN3AQ8TCU5 1115 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 WDR89Q96FK6 387 aaPredicted RBP7.9□□□□□ -1.14
SCFD1-221ENST00000556534 CYP4F12Q9HCS2 524 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 SAMM50Q9Y512 469 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 PCDHGC5Q9Y5F6 944 aa7.9□□□□□ -1.14
SCFD1-221ENST00000556534 SYNGAP1Q96PV0 1343 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 AOC2O75106 756 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 LIG1P18858 919 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 LIG3P49916 1009 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 KIF4BQ2VIQ3 1234 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 MAP1SQ66K74 1059 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-221ENST00000556534 TTBK2Q6IQ55 1244 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 LLGL2Q6P1M3 1020 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 MPRIPQ6WCQ1 1025 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-221ENST00000556534 KCNB2Q92953 911 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 GAL3ST3Q96A11 431 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 TP53INP1Q96A56 240 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 CBX8Q9HC52 389 aa7.89□□□□□ -1.15
SCFD1-221ENST00000556534 KIAA1522Q9P206 1035 aaPredicted RBP7.89□□□□□ -1.15
SCFD1-221ENST00000556534 MAP3K11Q16584 847 aa7.88□□□□□ -1.15
SCFD1-221ENST00000556534 RSPO4Q2I0M5 234 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-221ENST00000556534 NKAPLQ5M9Q1 402 aa7.88□□□□□ -1.15
SCFD1-221ENST00000556534 C2CD4AQ8NCU7 369 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-221ENST00000556534 GPBAR1Q8TDU6 330 aa7.88□□□□□ -1.15
SCFD1-221ENST00000556534 UTP4Q969X6 686 aaKnown RBP7.88□□□□□ -1.15
SCFD1-221ENST00000556534 TMPRSS2O15393 492 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 TRIM37O94972 964 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 DRD2P14416 443 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 RPS26P62854 115 aaKnown RBP7.87□□□□□ -1.15
SCFD1-221ENST00000556534 SOX4Q06945 474 aaPredicted RBP7.87□□□□□ -1.15
SCFD1-221ENST00000556534 LRRC14Q15048 493 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 AKAP4Q5JQC9 854 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 MRRFQ96E11 262 aaKnown RBP7.87□□□□□ -1.15
SCFD1-221ENST00000556534 MYRFLQ96LU7 910 aa7.87□□□□□ -1.15
SCFD1-221ENST00000556534 SCARA3Q6AZY7 606 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 AGMOQ6ZNB7 445 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 ERMP1Q7Z2K6 904 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 C12orf50Q8NA57 414 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-221ENST00000556534 ZNF428Q96B54 188 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 BACH2Q9BYV9 841 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 GSX1Q9H4S2 264 aaPredicted RBP7.86□□□□□ -1.15
SCFD1-221ENST00000556534 RAD18Q9NS91 495 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 PPP1R9AQ9ULJ8 1098 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 CYP8B1Q9UNU6 501 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 AP4E1Q9UPM8 1137 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 ACTL7BQ9Y614 415 aa7.86□□□□□ -1.15
SCFD1-221ENST00000556534 SART1O43290 800 aaKnown RBP7.85□□□□□ -1.15
SCFD1-221ENST00000556534 GAS2O43903 313 aaKnown RBP7.85□□□□□ -1.15
SCFD1-221ENST00000556534 TFE3P19532 575 aaPredicted RBP7.85□□□□□ -1.15
SCFD1-221ENST00000556534 HNRNPUQ00839 825 aaKnown RBP eCLIP7.85□□□□□ -1.15
SCFD1-221ENST00000556534 TSNAXIP1Q2TAA8 658 aa7.85□□□□□ -1.15
SCFD1-221ENST00000556534 PHC3Q8NDX5 983 aa7.85□□□□□ -1.15
SCFD1-221ENST00000556534 HIF3AQ9Y2N7 669 aa7.85□□□□□ -1.15
SCFD1-221ENST00000556534 F6X3S4 739 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 DYRK3O43781 588 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 H2AFB1P0C5Y9 115 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 H2AFB2P0C5Z0 115 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 RLBP1P12271 317 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 PTPN11Q06124 597 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-221ENST00000556534 SGO2Q562F6 1265 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 PRR23CQ6ZRP0 262 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 FAM20CQ8IXL6 584 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 ACSBG1Q96GR2 724 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 RHOVQ96L33 236 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 CRIM1Q9NZV1 1036 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 TLR6Q9Y2C9 796 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 PCDHB5Q9Y5E4 795 aa7.84□□□□□ -1.15
SCFD1-221ENST00000556534 DHX15O43143 795 aaKnown RBP7.83□□□□□ -1.16
SCFD1-221ENST00000556534 FURINP09958 794 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 FANCCQ00597 558 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 ID3Q02535 119 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 SEPT6Q14141 434 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 TMEM87AQ8NBN3 555 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 RSRP1Q9BUV0 290 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 FAM105AQ9NUU6 356 aa7.83□□□□□ -1.16
SCFD1-221ENST00000556534 BMP3P12645 472 aa7.82□□□□□ -1.16
SCFD1-221ENST00000556534 ZC3H12AQ5D1E8 599 aaKnown RBP7.82□□□□□ -1.16
SCFD1-221ENST00000556534 CDPF1Q6NVV7 123 aa7.82□□□□□ -1.16
SCFD1-221ENST00000556534 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.82□□□□□ -1.16
SCFD1-221ENST00000556534 FANCD2OSQ96PS1 177 aa7.82□□□□□ -1.16
SCFD1-221ENST00000556534 COPRSQ9NQ92 184 aa7.82□□□□□ -1.16
SCFD1-221ENST00000556534 SLFN14P0C7P3 912 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 ZNF76P36508 570 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 HS2ST1Q7LGA3 356 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 DYMQ7RTS9 669 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 TMEM74Q96NL1 305 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 ACSS3Q9H6R3 686 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 DISC1Q9NRI5 854 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 METTL5Q9NRN9 209 aaKnown RBP7.81□□□□□ -1.16
SCFD1-221ENST00000556534 KBTBD4Q9NVX7 518 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 PCDHA4Q9UN74 947 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 RAXQ9Y2V3 346 aa7.81□□□□□ -1.16
SCFD1-221ENST00000556534 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-221ENST00000556534 MAP4P27816 1152 aaKnown RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms