RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 SUGT1Q9Y2Z0 365 aa11.88□□□□□ -0.51
SRP54-210ENST00000556380 PCDHAC2Q9Y5I4 1007 aa11.88□□□□□ -0.51
SRP54-210ENST00000556380 AOX1Q06278 1338 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 SALL1Q9NSC2 1324 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 F8W031 263 aaPredicted RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 TRAF5O00463 557 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 ARID4AP29374 1257 aaPredicted RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 APLP1P51693 650 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 HDLBPQ00341 1268 aaKnown RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 FMR1Q06787 632 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■□□□□ 8.6
SRP54-210ENST00000556380 AAMPQ13685 434 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 CFAP100Q494V2 611 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 ARSIQ5FYB1 569 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 KIF1BPQ96EK5 621 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 ZNF512BQ96KM6 892 aaPredicted RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 PRMT6Q96LA8 375 aaPredicted RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 CCDC8Q9H0W5 538 aaPredicted RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 TLR7Q9NYK1 1049 aaKnown RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 HMG20BQ9P0W2 317 aa11.87□□□□□ -0.51
SRP54-210ENST00000556380 TTF2Q9UNY4 1162 aaKnown RBP11.87□□□□□ -0.51
SRP54-210ENST00000556380 MCAMP43121 646 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 MMRN1Q13201 1228 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 VARS2Q5ST30 1063 aaKnown RBP11.86□□□□□ -0.51
SRP54-210ENST00000556380 ANGEL2Q5VTE6 544 aaKnown RBP11.86□□□□□ -0.51
SRP54-210ENST00000556380 DLK2Q6UY11 383 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 CDC37L1Q7L3B6 337 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 USP48Q86UV5 1035 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 EXOC6Q8TAG9 804 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 GLIS2Q9BZE0 524 aaPredicted RBP11.86□□□□□ -0.51
SRP54-210ENST00000556380 IL1RAPL2Q9NP60 686 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 GGA3Q9NZ52 723 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 SERPINA10Q9UK55 444 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 ARAP2Q8WZ64 1704 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 PITPNM2Q9BZ72 1349 aa11.86□□□□□ -0.51
SRP54-210ENST00000556380 UQCRFS1P1P0C7P4 283 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 CRKP46108 304 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 HDAC1Q13547 482 aaPredicted RBP11.85□□□□□ -0.51
SRP54-210ENST00000556380 DLGAP5Q15398 846 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 GORABQ5T7V8 394 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 CST9Q5W186 159 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 PI16Q6UXB8 463 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 AACSQ86V21 672 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 SPATA5Q8NB90 893 aa11.85□□□□□ -0.51
SRP54-210ENST00000556380 APBB1O00213 710 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 PRDX5P30044 214 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 HTRA3P83110 453 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 CCDC158Q5M9N0 1113 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 APOBEC3HQ6NTF7 200 aaKnown RBP11.84□□□□□ -0.51
SRP54-210ENST00000556380 HHIPL2Q6UWX4 724 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 KRT26Q7Z3Y9 468 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 DNAJC5GQ8N7S2 189 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 TMC2Q8TDI7 906 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 ZNF384Q8TF68 577 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 DCPSQ96C86 337 aaKnown RBP11.84□□□□□ -0.51
SRP54-210ENST00000556380 ZDHHC15Q96MV8 337 aa11.84□□□□□ -0.51
SRP54-210ENST00000556380 ADM5C9JUS6 153 aa11.83□□□□□ -0.52
SRP54-210ENST00000556380 SMARCA5O60264 1052 aaPredicted RBP11.83□□□□□ -0.52
SRP54-210ENST00000556380 LDHBP07195 334 aaKnown RBP11.83□□□□□ -0.52
SRP54-210ENST00000556380 TTC39AQ5SRH9 613 aa11.83□□□□□ -0.52
SRP54-210ENST00000556380 TBC1D9Q6ZT07 1266 aa11.83□□□□□ -0.52
SRP54-210ENST00000556380 CLASRPQ8N2M8 674 aaKnown RBP11.83□□□□□ -0.52
SRP54-210ENST00000556380 KHSRPQ92945 711 aaKnown RBP eCLIP11.83□□□□□ -0.522e-7■□□□□ 9.6
SRP54-210ENST00000556380 LRRCC1Q9C099 1032 aa11.83□□□□□ -0.52
SRP54-210ENST00000556380 POLR2AP24928 1970 aaKnown RBP11.82□□□□□ -0.52
SRP54-210ENST00000556380 TMEM88BA6NKF7 163 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 CYP2E1P05181 493 aaPredicted RBP11.82□□□□□ -0.52
SRP54-210ENST00000556380 DIXDC1Q155Q3 683 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 SULF1Q8IWU6 871 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 ZGPATQ8N5A5 531 aaKnown RBP11.82□□□□□ -0.52
SRP54-210ENST00000556380 TEKT1Q969V4 418 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 SNRKQ9NRH2 765 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 SCAF8Q9UPN6 1271 aaKnown RBP11.82□□□□□ -0.52
SRP54-210ENST00000556380 MAST3O60307 1309 aa11.82□□□□□ -0.52
SRP54-210ENST00000556380 CLRN2A0PK11 232 aa11.81□□□□□ -0.52
SRP54-210ENST00000556380 ZAP70P43403 619 aa11.81□□□□□ -0.52
SRP54-210ENST00000556380 RBM5P52756 815 aaKnown RBP eCLIP11.81□□□□□ -0.52
SRP54-210ENST00000556380 SPTY2D1Q68D10 685 aaPredicted RBP11.81□□□□□ -0.52
SRP54-210ENST00000556380 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.81□□□□□ -0.52
SRP54-210ENST00000556380 ZNF70Q9UC06 446 aaPredicted RBP11.81□□□□□ -0.52
SRP54-210ENST00000556380 ABCF2Q9UG63 623 aa11.81□□□□□ -0.52
SRP54-210ENST00000556380 DAGLAQ9Y4D2 1042 aa11.81□□□□□ -0.52
SRP54-210ENST00000556380 GAKO14976 1311 aa11.81□□□□□ -0.52
SRP54-210ENST00000556380 CELF2O95319 508 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 IGHDP01880 384 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 IFIT2P09913 472 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 IRX6P78412 446 aaPredicted RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 MECOMQ03112 1051 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 PRAMEF18Q5VWM3 479 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 ERICH6Q7L0X2 663 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 APOBEC3FQ8IUX4 373 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 NSUN4Q96CB9 384 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 CDCA5Q96FF9 252 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 DEFB129Q9H1M3 183 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 TDRD3Q9H7E2 651 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 PIH1D3Q9NQM4 214 aaKnown RBP11.8□□□□□ -0.52
SRP54-210ENST00000556380 AKAP11Q9UKA4 1901 aa11.8□□□□□ -0.52
SRP54-210ENST00000556380 MYO1BO43795 1136 aa11.79□□□□□ -0.52
SRP54-210ENST00000556380 IGSF3O75054 1194 aa11.79□□□□□ -0.52
SRP54-210ENST00000556380 ATP5JP18859 108 aa11.79□□□□□ -0.52
SRP54-210ENST00000556380 FKBP1CQ5VVH2 108 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms