RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 FANCIQ9NVI1 1328 aa13.62□□□□□ -0.23
SYNE2-221ENST00000556342 USP2O75604 605 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-221ENST00000556342 CRHR2Q13324 411 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 RASA3Q14644 834 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 CCDC184Q52MB2 194 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 OTUD7BQ6GQQ9 843 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 ANKRD13AQ8IZ07 590 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 GCC1Q96CN9 775 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 PTPN22Q9Y2R2 807 aa13.61□□□□□ -0.23
SYNE2-221ENST00000556342 TESPA1A2RU30 521 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-221ENST00000556342 VAMP4O75379 141 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 RBM5P52756 815 aaKnown RBP eCLIP13.6□□□□□ -0.23
SYNE2-221ENST00000556342 EPHA10Q5JZY3 1008 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 BEND3Q5T5X7 828 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 LMBR1LQ6UX01 489 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 LDHAL6AQ6ZMR3 332 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 CD99L2Q8TCZ2 262 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 ZNF594Q96JF6 807 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-221ENST00000556342 PTPN18Q99952 460 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 KRTAP3-3Q9BYR6 98 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 KRTAP3-2Q9BYR7 98 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 FAM205AQ6ZU69 1335 aa13.6□□□□□ -0.23
SYNE2-221ENST00000556342 F6X3S4 739 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 PLIN1O60240 522 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 TNFAIP1Q13829 316 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 CCDC57Q2TAC2 916 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 ARMC5Q96C12 935 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 EFCC1Q9HA90 598 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 CNNM1Q9NRU3 951 aa13.59□□□□□ -0.23
SYNE2-221ENST00000556342 BRCA2P51587 3418 aa13.58□□□□□ -0.23
SYNE2-221ENST00000556342 LAMB1P07942 1786 aa13.58□□□□□ -0.23
SYNE2-221ENST00000556342 ECM29Q5VYK3 1845 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 KIAA0100Q14667 2235 aaKnown RBP13.58□□□□□ -0.24
SYNE2-221ENST00000556342 GRM8O00222 908 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 SP3Q02447 781 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 TAF7LQ5H9L4 462 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 MFSD14BQ5SR56 506 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 TDRD7Q8NHU6 1098 aaKnown RBP13.58□□□□□ -0.24
SYNE2-221ENST00000556342 OPTNQ96CV9 577 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 ZNF70Q9UC06 446 aaPredicted RBP13.58□□□□□ -0.24
SYNE2-221ENST00000556342 SERPINA10Q9UK55 444 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 A0A1B0GUL6 1792 aa13.58□□□□□ -0.24
SYNE2-221ENST00000556342 CAP1Q01518 475 aa13.57□□□□□ -0.24
SYNE2-221ENST00000556342 EXOSC9Q06265 439 aaKnown RBP13.57□□□□□ -0.24
SYNE2-221ENST00000556342 CAMK2BQ13554 666 aa13.57□□□□□ -0.24
SYNE2-221ENST00000556342 TDRD3Q9H7E2 651 aaKnown RBP13.57□□□□□ -0.24
SYNE2-221ENST00000556342 ELP3Q9H9T3 547 aa13.57□□□□□ -0.24
SYNE2-221ENST00000556342 TTF2Q9UNY4 1162 aaKnown RBP13.57□□□□□ -0.24
SYNE2-221ENST00000556342 HIBADHP31937 336 aaKnown RBP13.56□□□□□ -0.24
SYNE2-221ENST00000556342 GYG1P46976 350 aa13.56□□□□□ -0.24
SYNE2-221ENST00000556342 UBE4AQ14139 1066 aa13.56□□□□□ -0.24
SYNE2-221ENST00000556342 HABP4Q5JVS0 413 aaKnown RBP13.56□□□□□ -0.24
SYNE2-221ENST00000556342 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.56□□□□□ -0.24
SYNE2-221ENST00000556342 DZIP1LQ8IYY4 767 aaKnown RBP13.56□□□□□ -0.24
SYNE2-221ENST00000556342 BRI3BPQ8WY22 251 aa13.56□□□□□ -0.24
SYNE2-221ENST00000556342 TEPSINQ96N21 525 aa13.56□□□□□ -0.24
SYNE2-221ENST00000556342 EN2P19622 333 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-221ENST00000556342 CRKP46108 304 aa13.55□□□□□ -0.24
SYNE2-221ENST00000556342 WDR63Q8IWG1 891 aa13.55□□□□□ -0.24
SYNE2-221ENST00000556342 FAM84BQ96KN1 310 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-221ENST00000556342 TMEM39BQ9GZU3 492 aa13.55□□□□□ -0.24
SYNE2-221ENST00000556342 EMILIN3Q9NT22 766 aa13.55□□□□□ -0.24
SYNE2-221ENST00000556342 CCL15-CCL14A0A0B4J2E2 113 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 TCP10L2B9ZVM9 353 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 GTF2A2P52657 109 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 MAP3K9P80192 1104 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 VGLL4Q14135 290 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 TAF1CQ15572 869 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-221ENST00000556342 CCL15Q16663 113 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.54□□□□□ -0.24
SYNE2-221ENST00000556342 ZNF333Q96JL9 665 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 ZFYVE28Q9HCC9 887 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 C9orf78Q9NZ63 289 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-221ENST00000556342 SALL2Q9Y467 1007 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-221ENST00000556342 CACNA1FO60840 1977 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 OTOFQ9HC10 1997 aa13.54□□□□□ -0.24
SYNE2-221ENST00000556342 RBBP6Q7Z6E9 1792 aaKnown RBP13.53□□□□□ -0.24
SYNE2-221ENST00000556342 ALDH1L1O75891 902 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 TNNI2P48788 182 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 ARHGEF6Q15052 776 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 FAM43AQ8N2R8 423 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 PUS3Q9BZE2 481 aaKnown RBP13.53□□□□□ -0.24
SYNE2-221ENST00000556342 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 CSADQ9Y600 493 aa13.53□□□□□ -0.24
SYNE2-221ENST00000556342 GRIK5Q16478 980 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 SLC9C1Q4G0N8 1177 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 KAZALD1Q96I82 304 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 SUCLG2Q96I99 432 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 RIPOR2Q9Y4F9 1068 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 PTCH2Q9Y6C5 1203 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 MROH5Q6ZUA9 1318 aa13.52□□□□□ -0.25
SYNE2-221ENST00000556342 SPDYE5A6NIY4 337 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 HDLBPQ00341 1268 aaKnown RBP13.51□□□□□ -0.25
SYNE2-221ENST00000556342 SLC4A10Q6U841 1118 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 FBXO33Q7Z6M2 555 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 NBPF11Q86T75 865 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 VPS37DQ86XT2 251 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 SRCIN1Q9C0H9 1055 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 MRS2Q9HD23 443 aa13.51□□□□□ -0.25
SYNE2-221ENST00000556342 IQSEC3Q9UPP2 1182 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms