RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 MAP3K9P80192 1104 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 GORABQ5T7V8 394 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 DCAF15Q66K64 600 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 CDC42EP5Q6NZY7 148 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 CLMNQ96JQ2 1002 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 CHMP4BQ9H444 224 aaKnown RBP14.59□□□□□ -0.07
VRK1-204ENST00000555351 FZD1Q9UP38 647 aa14.59□□□□□ -0.07
VRK1-204ENST00000555351 CASP8AP2Q9UKL3 1982 aa14.58□□□□□ -0.07
VRK1-204ENST00000555351 TESPA1A2RU30 521 aaPredicted RBP14.58□□□□□ -0.08
VRK1-204ENST00000555351 DIXDC1Q155Q3 683 aa14.58□□□□□ -0.08
VRK1-204ENST00000555351 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.58□□□□□ -0.08
VRK1-204ENST00000555351 DZIP1Q86YF9 867 aaKnown RBP14.58□□□□□ -0.08
VRK1-204ENST00000555351 ZNF512BQ96KM6 892 aaPredicted RBP14.58□□□□□ -0.08
VRK1-204ENST00000555351 IDI2Q9BXS1 227 aa14.58□□□□□ -0.08
VRK1-204ENST00000555351 HMG20BQ9P0W2 317 aa14.58□□□□□ -0.08
VRK1-204ENST00000555351 CSADQ9Y600 493 aa14.58□□□□□ -0.08
VRK1-204ENST00000555351 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.58□□□□□ -0.08
VRK1-204ENST00000555351 MYH2Q9UKX2 1941 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 ENTPD3O75355 529 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
VRK1-204ENST00000555351 SURF6O75683 361 aaKnown RBP14.57□□□□□ -0.08
VRK1-204ENST00000555351 CACNB3P54284 484 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 GSTO1P78417 241 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 OTUD7BQ6GQQ9 843 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 IFNL1Q8IU54 200 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 CDAN1Q8IWY9 1227 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 SPATA5Q8NB90 893 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 MCOLN1Q9GZU1 580 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 USP40Q9NVE5 1235 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 ABCF2Q9UG63 623 aa14.57□□□□□ -0.08
VRK1-204ENST00000555351 LDHCP07864 332 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 OS9Q13438 667 aaPredicted RBP14.56□□□□□ -0.08
VRK1-204ENST00000555351 DGKZQ13574 1117 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 VGLL4Q14135 290 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 PKN2Q16513 984 aaKnown RBP14.56□□□□□ -0.08
VRK1-204ENST00000555351 HSP90AB4PQ58FF6 505 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 TNNI3KQ59H18 835 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 CEP85Q6P2H3 762 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 ERICH6Q7L0X2 663 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 ERC1Q8IUD2 1116 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 OPTNQ96CV9 577 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 RCAN3Q9UKA8 241 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 DDX19BQ9UMR2 479 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 FPGT-TNNI3KV9GXZ4 949 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 MROH7-TTC4A0A0A0MT08 1334 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 RFX7Q2KHR2 1363 aa14.56□□□□□ -0.08
VRK1-204ENST00000555351 GPR75-ASB3A0A0A6YYF3 556 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 SPDYE5A6NIY4 337 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 GPR25O00155 361 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 CAPN15O75808 1086 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 GJA5P36382 358 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 MKRN3Q13064 507 aaKnown RBP14.55□□□□□ -0.08
VRK1-204ENST00000555351 CCDC158Q5M9N0 1113 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 CTU1Q7Z7A3 348 aaKnown RBP14.55□□□□□ -0.08
VRK1-204ENST00000555351 ERO1BQ86YB8 467 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 RPAP2Q8IXW5 612 aaPredicted RBP14.55□□□□□ -0.08
VRK1-204ENST00000555351 PANK1Q8TE04 598 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 ZNF341Q9BYN7 854 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 C1orf115Q9H7X2 142 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 FAM198AQ9UFP1 575 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 ZNF112Q9UJU3 913 aa14.55□□□□□ -0.08
VRK1-204ENST00000555351 TBC1D8O95759 1140 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 MCAMP43121 646 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 GTF2A2P52657 109 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 MECOMQ03112 1051 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 TMED8Q6PL24 325 aaPredicted RBP14.54□□□□□ -0.08
VRK1-204ENST00000555351 ZNF296Q8WUU4 475 aaPredicted RBP14.54□□□□□ -0.08
VRK1-204ENST00000555351 MS4A4AQ96JQ5 239 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 WRNIP1Q96S55 665 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 ELP3Q9H9T3 547 aa14.54□□□□□ -0.08
VRK1-204ENST00000555351 ZCCHC17Q9NP64 241 aaKnown RBP14.54□□□□□ -0.08
VRK1-204ENST00000555351 COL2A1P02458 1487 aaPredicted RBP14.54□□□□□ -0.08
VRK1-204ENST00000555351 IGF2BP3O00425 579 aaKnown RBP eCLIP14.53□□□□□ -0.08
VRK1-204ENST00000555351 MAP3K10Q02779 954 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 NFIAQ12857 509 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 PDE3AQ14432 1141 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 TTC39AQ5SRH9 613 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.53□□□□□ -0.08
VRK1-204ENST00000555351 NSUN4Q96CB9 384 aaKnown RBP14.53□□□□□ -0.08
VRK1-204ENST00000555351 ZBTB40Q9NUA8 1239 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 SNCAIPQ9Y6H5 919 aa14.53□□□□□ -0.08
VRK1-204ENST00000555351 DOCK2Q92608 1830 aa14.52□□□□□ -0.08
VRK1-204ENST00000555351 MAST2Q6P0Q8 1798 aa14.52□□□□□ -0.08
VRK1-204ENST00000555351 ATRNL1Q5VV63 1379 aa14.52□□□□□ -0.08
VRK1-204ENST00000555351 FKTNO75072 461 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 HMMRO75330 724 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 WDHD1O75717 1129 aaPredicted RBP14.52□□□□□ -0.09
VRK1-204ENST00000555351 BTDP43251 543 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 RGS3P49796 1198 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 PPATQ06203 517 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 TCP10Q12799 353 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 PPIL2Q13356 520 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 NOL9Q5SY16 702 aaKnown RBP14.52□□□□□ -0.09
VRK1-204ENST00000555351 ZNF384Q8TF68 577 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 DBNDD2Q9BQY9 259 aa14.52□□□□□ -0.09
VRK1-204ENST00000555351 CETPP11597 493 aa14.51□□□□□ -0.09
VRK1-204ENST00000555351 RHBDL3P58872 404 aa14.51□□□□□ -0.09
VRK1-204ENST00000555351 PI16Q6UXB8 463 aa14.51□□□□□ -0.09
VRK1-204ENST00000555351 LRP2BPQ9P2M1 347 aa14.51□□□□□ -0.09
VRK1-204ENST00000555351 DBNLQ9UJU6 430 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms