RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 SLURP2P0DP57 97 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 CFAP100Q494V2 611 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 RBM26Q5T8P6 1007 aaKnown RBP12.92□□□□□ -0.34
TDP1-211ENST00000555178 NAV1Q8NEY1 1877 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 GPR75-ASB3A0A0A6YYF3 556 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 HSPD1P10809 573 aaKnown RBP12.92□□□□□ -0.34
TDP1-211ENST00000555178 TNIP1Q15025 636 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 SLC4A8Q2Y0W8 1093 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 NBPF9Q3BBW0 867 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 ZSCAN25Q6NSZ9 544 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 MICALL2Q8IY33 904 aa12.92□□□□□ -0.34
TDP1-211ENST00000555178 CNOT7Q9UIV1 285 aaKnown RBP12.92□□□□□ -0.34
TDP1-211ENST00000555178 LAMA4Q16363 1823 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 GSG1L2A8MUP6 293 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 USP17L8P0C7I0 530 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 RBM5P52756 815 aaKnown RBP eCLIP12.91□□□□□ -0.34
TDP1-211ENST00000555178 TBC1D10BQ4KMP7 808 aaPredicted RBP12.91□□□□□ -0.34
TDP1-211ENST00000555178 ZFPM1Q8IX07 1006 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 AGBL3Q8NEM8 1001 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 NKX2-3Q8TAU0 364 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 TRPM4Q8TD43 1214 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 FAM163AQ96GL9 167 aaPredicted RBP12.91□□□□□ -0.34
TDP1-211ENST00000555178 KIF2CQ99661 725 aa12.91□□□□□ -0.34
TDP1-211ENST00000555178 TDRD3Q9H7E2 651 aaKnown RBP12.91□□□□□ -0.34
TDP1-211ENST00000555178 DDX4Q9NQI0 724 aaKnown RBP12.91□□□□□ -0.34
TDP1-211ENST00000555178 DDX60LQ5H9U9 1706 aaKnown RBP12.91□□□□□ -0.34
TDP1-211ENST00000555178 CYP2D7A0A087X1C5 515 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 POTECB2RU33 542 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 RBM25P49756 843 aaKnown RBP12.9□□□□□ -0.34
TDP1-211ENST00000555178 HIRAP54198 1017 aaPredicted RBP12.9□□□□□ -0.34
TDP1-211ENST00000555178 NFIAQ12857 509 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 CDC42EP5Q6NZY7 148 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 KIAA1211Q6ZU35 1233 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 GPC2Q8N158 579 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 AIDAQ96BJ3 306 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 SUGT1Q9Y2Z0 365 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 TACC3Q9Y6A5 838 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 SIPA1L1O43166 1804 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 LRRFIP1Q32MZ4 808 aaKnown RBP12.9□□□□□ -0.34
TDP1-211ENST00000555178 TEKT1Q969V4 418 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 ZDHHC15Q96MV8 337 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 RBM8AQ9Y5S9 174 aaKnown RBP12.9□□□□□ -0.34
TDP1-211ENST00000555178 SLC4A4Q9Y6R1 1079 aa12.9□□□□□ -0.34
TDP1-211ENST00000555178 CLRN2A0PK11 232 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 CYP2D6P10635 497 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 ZNF280AP59817 542 aaPredicted RBP12.89□□□□□ -0.35
TDP1-211ENST00000555178 HHIPL2Q6UWX4 724 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 DLK2Q6UY11 383 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 MAP4K1Q92918 833 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 ZBED3Q96IU2 234 aaPredicted RBP12.89□□□□□ -0.35
TDP1-211ENST00000555178 MYOZ2Q9NPC6 264 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 INCENPQ9NQS7 918 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 GPRC5DQ9NZD1 345 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 WDHD1O75717 1129 aaPredicted RBP12.89□□□□□ -0.35
TDP1-211ENST00000555178 PPP4CP60510 307 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 MAPKAPK5Q8IW41 473 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 CDAN1Q8IWY9 1227 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 RASEFQ8IZ41 740 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 TGFBRAP1Q8WUH2 860 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 USP40Q9NVE5 1235 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 SERPINA10Q9UK55 444 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 MYO3BQ8WXR4 1341 aa12.89□□□□□ -0.35
TDP1-211ENST00000555178 LAMB1P07942 1786 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 SPDYE2BA6NHP3 402 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 WNT10BO00744 389 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 FGAP02671 866 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 SPDYE6P0CI01 402 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 GSTO1P78417 241 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 TICAM2Q86XR7 235 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 STK11IPQ8N1F8 1099 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 NBPF3Q9H094 633 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
TDP1-211ENST00000555178 LDHCP07864 332 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 HSPA4P34932 840 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 HAND2P61296 217 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 IFNL3Q8IZI9 196 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 DPF2Q92785 391 aa12.88□□□□□ -0.35
TDP1-211ENST00000555178 SAP30BPQ9UHR5 308 aaKnown RBP12.88□□□□□ -0.35
TDP1-211ENST00000555178 GLTPD2A6NH11 291 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 HDLBPQ00341 1268 aaKnown RBP12.87□□□□□ -0.35
TDP1-211ENST00000555178 PICALMQ13492 652 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 NECTIN1Q15223 517 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 TEX11Q8IYF3 940 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 MRIQ9BWK5 157 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 FAM198AQ9UFP1 575 aa12.87□□□□□ -0.35
TDP1-211ENST00000555178 PATL2C9JE40 543 aaKnown RBP12.86□□□□□ -0.35
TDP1-211ENST00000555178 APPP05067 770 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 POTEIP0CG38 1075 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 POTEJP0CG39 1038 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 RPS12P25398 132 aaKnown RBP12.86□□□□□ -0.35
TDP1-211ENST00000555178 TCP10Q12799 353 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 DLGAP5Q15398 846 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 OGFOD1Q8N543 542 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 ZNF526Q8TF50 670 aaPredicted RBP12.86□□□□□ -0.35
TDP1-211ENST00000555178 DCP1AQ9NPI6 582 aaPredicted RBP12.86□□□□□ -0.35
TDP1-211ENST00000555178 WDR90Q96KV7 1748 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 SLC27A2O14975 620 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 SCN4AP35499 1836 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 CREB3L3Q68CJ9 461 aa12.86□□□□□ -0.35
TDP1-211ENST00000555178 SH3BP5LQ7L8J4 393 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms