RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 DYNLL1P63167 89 aaKnown RBP13.72□□□□□ -0.21
SHMT2-212ENST00000554467 OTUD7BQ6GQQ9 843 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 MTERF4Q7Z6M4 381 aaKnown RBP13.72□□□□□ -0.21
SHMT2-212ENST00000554467 GJB4Q9NTQ9 266 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 LAMB2P55268 1798 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 TAF1LQ8IZX4 1826 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 GSG1L2A8MUP6 293 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 TDO2P48775 406 aa13.72□□□□□ -0.21
SHMT2-212ENST00000554467 TRDNQ13061 729 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 UBE4AQ14139 1066 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 SLC4A8Q2Y0W8 1093 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 TICAM2Q86XR7 235 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 ZKSCAN3Q9BRR0 538 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 MYL10Q9BUA6 226 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 ANKIB1Q9P2G1 1089 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 PLCB2Q00722 1185 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 SASS6Q6UVJ0 657 aa13.71□□□□□ -0.21
SHMT2-212ENST00000554467 ARAP2Q8WZ64 1704 aa13.71□□□□□ -0.22
SHMT2-212ENST00000554467 PDCP20941 246 aa13.71□□□□□ -0.22
SHMT2-212ENST00000554467 AGXT2Q9BYV1 514 aa13.71□□□□□ -0.22
SHMT2-212ENST00000554467 GNL3LQ9NVN8 582 aaKnown RBP13.71□□□□□ -0.22
SHMT2-212ENST00000554467 ZNF831Q5JPB2 1677 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 CYP2D7A0A087X1C5 515 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 PATL2C9JE40 543 aaKnown RBP13.7□□□□□ -0.22
SHMT2-212ENST00000554467 GYS1P13807 737 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 PPP4R3BQ5MIZ7 849 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 ZNF384Q8TF68 577 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 FTOQ9C0B1 505 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHMT2-212ENST00000554467 ATP6V1DQ9Y5K8 247 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 MINDY4BA8MYZ0 360 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 MBD3O95983 291 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 EVX2Q03828 476 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 PRR5LQ6MZQ0 368 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 PROM2Q8N271 834 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 ZNF804BA4D1E1 1349 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 CBX1P83916 185 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 TTC6Q86TZ1 520 aa13.7□□□□□ -0.22
SHMT2-212ENST00000554467 TNRC6CQ9HCJ0 1690 aaKnown RBP13.7□□□□□ -0.22
SHMT2-212ENST00000554467 C4AP0C0L4 1744 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 HPS5Q9UPZ3 1129 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 LY75O60449 1722 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 UTRNP46939 3433 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 CARMIL3Q8ND23 1372 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 PTMAP06454 111 aaKnown RBP13.69□□□□□ -0.22
SHMT2-212ENST00000554467 PRDX5P30044 214 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 MICU3Q86XE3 530 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 SMARCC2Q8TAQ2 1214 aa13.69□□□□□ -0.22
SHMT2-212ENST00000554467 HIBADHP31937 336 aaKnown RBP13.68□□□□□ -0.22
SHMT2-212ENST00000554467 BRWD3Q6RI45 1802 aa13.68□□□□□ -0.22
SHMT2-212ENST00000554467 MAGEB6P1A0A0J9YX57 407 aa13.68□□□□□ -0.22
SHMT2-212ENST00000554467 SERPINB2P05120 415 aa13.68□□□□□ -0.22
SHMT2-212ENST00000554467 FDPSP14324 419 aaKnown RBP13.68□□□□□ -0.22
SHMT2-212ENST00000554467 ADD1P35611 737 aaKnown RBP13.68□□□□□ -0.22
SHMT2-212ENST00000554467 TXNRD1Q16881 649 aa13.68□□□□□ -0.22
SHMT2-212ENST00000554467 ZNF274Q96GC6 653 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-212ENST00000554467 ZSWIM5Q9P217 1185 aa13.68□□□□□ -0.22
SHMT2-212ENST00000554467 NAA16Q6N069 864 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-212ENST00000554467 NFXL1Q6ZNB6 911 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 FBXO33Q7Z6M2 555 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 AIFM3Q96NN9 605 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 UBE2Q2LH0YL09 131 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 PRDM1O75626 825 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 KRT85P78386 507 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 RPGRQ92834 1020 aaKnown RBP13.67□□□□□ -0.22
SHMT2-212ENST00000554467 TMEM51Q9NW97 253 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 AATFQ9NY61 560 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHMT2-212ENST00000554467 CPLX1O14810 134 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 UBE2HP62256 183 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 DDR1Q08345 913 aa13.67□□□□□ -0.22
SHMT2-212ENST00000554467 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-212ENST00000554467 MECOMQ03112 1051 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 RESTQ13127 1097 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 CSPP1Q1MSJ5 1256 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 TMEM67Q5HYA8 995 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 TMEM87AQ8NBN3 555 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 PHKBQ93100 1093 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 ANGEL1Q9UNK9 670 aaKnown RBP13.66□□□□□ -0.22
SHMT2-212ENST00000554467 DOCK2Q92608 1830 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 MFSD6Q6ZSS7 791 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 CCDC82Q8N4S0 544 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 SPATA32Q96LK8 384 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 A0A1B0GUL6 1792 aa13.66□□□□□ -0.22
SHMT2-212ENST00000554467 SH2B2O14492 632 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 IFIT3O14879 490 aaKnown RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 GRAPQ13588 217 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 GRIK5Q16478 980 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 ZNF827Q17R98 1081 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 GRAPLQ8TC17 118 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 LLPHQ9BRT6 129 aaKnown RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 NACAP1Q9BZK3 213 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 ANKRD2Q9GZV1 360 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 COL24A1Q17RW2 1714 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 CDC27P30260 824 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 AKNAD1Q5T1N1 836 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 LRSAM1Q6UWE0 723 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 CMTR1Q8N1G2 835 aaKnown RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 MYRIPQ8NFW9 859 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 ORC3Q9UBD5 711 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-212ENST00000554467 LIG1P18858 919 aa13.65□□□□□ -0.22
SHMT2-212ENST00000554467 CAMK4Q16566 473 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms