RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 HOXA10P31260 410 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 CTCFP49711 727 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 TERF1P54274 439 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 BIRC2Q13490 618 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 MTHFSDQ2M296 383 aaKnown RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 EGFLAMQ63HQ2 1017 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 RTKN2Q8IZC4 609 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 DDRGK1Q96HY6 314 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 CCDC85AQ96PX6 553 aaPredicted RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 TBC1D2Q9BYX2 928 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 PIF1Q9H611 641 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 LGR6Q9HBX8 967 aa3.34□□□□□ -1.87
PRPF39-206ENST00000554429 MKRN1Q9UHC7 482 aaKnown RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 PUF60Q9UHX1 559 aaKnown RBP3.34□□□□□ -1.87
PRPF39-206ENST00000554429 COL4A5P29400 1685 aa3.34□□□□□ -1.88
PRPF39-206ENST00000554429 NBPF26B4DH59 902 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 ERVV-1B6SEH8 477 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 HSPA5P11021 654 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 HDAC1Q13547 482 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TBC1D9BQ66K14 1250 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 ZNF790Q6PG37 636 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 PNMA8AQ86V59 439 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 CACTIN-AS1Q8N1I8 211 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 FMNL2Q96PY5 1086 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TAOK3Q9H2K8 898 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TAF1DQ9H5J8 278 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 IQSEC3Q9UPP2 1182 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TMA7Q9Y2S6 64 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 GNAT3A8MTJ3 354 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 ST5P78524 1137 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TCEAL1Q15170 157 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 NBPF9Q3BBW0 867 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 PUS10Q3MIT2 529 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 CCDC93Q567U6 631 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 PARP9Q8IXQ6 854 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 MSL3Q8N5Y2 521 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 C1orf131Q8NDD1 294 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 IL17REQ8NFR9 667 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 SNIP1Q8TAD8 396 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 KCNB2Q92953 911 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 NEUROD6Q96NK8 337 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 RTFDC1Q9BY42 306 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 BABAM1Q9NWV8 329 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TAF1P21675 1872 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TMEM88BA6NKF7 163 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 DIAPH1O60610 1272 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TBX4P57082 545 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 MAP3K9P80192 1104 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 CCDC144BQ3MJ40 725 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 PPP1R15BQ5SWA1 713 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 GPC2Q8N158 579 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 ANP32BQ92688 251 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 LRRC27Q9C0I9 530 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 KNSTRNQ9Y448 316 aa3.33□□□□□ -1.88
PRPF39-206ENST00000554429 RBM19Q9Y4C8 960 aaKnown RBP3.33□□□□□ -1.88
PRPF39-206ENST00000554429 TLDC2A0PJX2 215 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 CA12O43570 354 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 PTCD1O75127 700 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 HSPA8P11142 646 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ALDH1B1P30837 517 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 MLLT3P42568 568 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 MAP2K1Q02750 393 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 FOXC1Q12948 553 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 SF3A1Q15459 793 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 SLC10A5Q5PT55 438 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 SDE2Q6IQ49 451 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 PRPF40BQ6NWY9 871 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 FMNL3Q8IVF7 1028 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 CEP120Q8N960 986 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 PIK3R5Q8WYR1 880 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 SCARF2Q96GP6 870 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ZNF496Q96IT1 587 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 CRAMP1Q96RY5 1269 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ADAMTS8Q9UP79 889 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ZNF652Q9Y2D9 606 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 NUB1Q9Y5A7 615 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ECM29Q5VYK3 1845 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 FOXN1O15353 648 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 RECKO95980 971 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ADH1BP00325 375 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 MAP2K2P36507 400 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 USP5P45974 858 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 TDO2P48775 406 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 E2F4Q16254 413 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 TSNAXIP1Q2TAA8 658 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ERFEQ4G0M1 354 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 USP50Q70EL3 339 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 PDILTQ8N807 584 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 CNBD1Q8NA66 436 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 PNISRQ8TF01 805 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 GLMNQ92990 594 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 SETDB2Q96T68 719 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 TMEM51Q9NW97 253 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 HACL1Q9UJ83 578 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 ISY1Q9ULR0 285 aaKnown RBP3.32□□□□□ -1.88
PRPF39-206ENST00000554429 AKAP11Q9UKA4 1901 aa3.32□□□□□ -1.88
PRPF39-206ENST00000554429 TTC24A2A3L6 582 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-206ENST00000554429 K7ELQ4 463 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-206ENST00000554429 EIF3JO75822 258 aaKnown RBP3.31□□□□□ -1.88
PRPF39-206ENST00000554429 SNRPA1P09661 255 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms