RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ASTN2O75129 1339 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-216ENST00000552909 SASH1O94885 1247 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 KIAA0825Q8IV33 1275 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 LPIN2Q92539 896 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 TSPY26PQ9H489 355 aa9.09□□□□□ -0.95
LIMA1-216ENST00000552909 USP17L8P0C7I0 530 aa9.08□□□□□ -0.96
LIMA1-216ENST00000552909 ADORA1P30542 326 aa9.08□□□□□ -0.96
LIMA1-216ENST00000552909 ZNF280AP59817 542 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-216ENST00000552909 VPS37DQ86XT2 251 aa9.08□□□□□ -0.96
LIMA1-216ENST00000552909 SCAF8Q9UPN6 1271 aaKnown RBP9.08□□□□□ -0.96
LIMA1-216ENST00000552909 F8W031 263 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 TRAF5O00463 557 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 SURF6O75683 361 aaKnown RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 IFIT1P09914 478 aaKnown RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 PKP1Q13835 747 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 GRIK5Q16478 980 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 CAVIN4Q5BKX8 364 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 FEZ1Q99689 392 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 EXOC6BQ9Y2D4 811 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 PCDHAC2Q9Y5I4 1007 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 A0A1B0GUL7 405 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 CDC45O75419 566 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 SLC5A1P13866 664 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 U2AF2P26368 475 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 CHAF1AQ13111 956 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 G3BP1Q13283 466 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 KIF4BQ2VIQ3 1234 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 NBPF9Q3BBW0 867 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 SYAP1Q96A49 352 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 GLIS2Q9BZE0 524 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-216ENST00000552909 MYOZ2Q9NPC6 264 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 DIAPH3Q9NSV4 1193 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 SPTLC3Q9NUV7 552 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 PGAP2Q9UHJ9 254 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 AK9Q5TCS8 1911 aa9.07□□□□□ -0.96
LIMA1-216ENST00000552909 FAM205AQ6ZU69 1335 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 PASKQ96RG2 1323 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 ZNF609O15014 1411 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 VGLL3A8MV65 326 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 SMARCA5O60264 1052 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-216ENST00000552909 PHKA1P46020 1223 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 APLP1P51693 650 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 MFSD14BQ5SR56 506 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 ANKRD7Q92527 254 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 WNT10BO00744 389 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 IGSF3O75054 1194 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 GABPB1Q06547 395 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-216ENST00000552909 SCARF1Q14162 830 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 OGFOD1Q8N543 542 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 ZC3H15Q8WU90 426 aaKnown RBP9.06□□□□□ -0.96
LIMA1-216ENST00000552909 XAGE2Q96GT9 111 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 NEUROD6Q96NK8 337 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 OGFRQ9NZT2 677 aa9.06□□□□□ -0.96
LIMA1-216ENST00000552909 MYO3BQ8WXR4 1341 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 UVSSAQ2YD98 709 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 CCDC102BQ68D86 513 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 FAM184AQ8NB25 1140 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 ZNF830Q96NB3 372 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-216ENST00000552909 GGA3Q9NZ52 723 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 COL1A1P02452 1464 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-216ENST00000552909 AOX1Q06278 1338 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 OS9Q13438 667 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-216ENST00000552909 ANGEL2Q5VTE6 544 aaKnown RBP9.05□□□□□ -0.96
LIMA1-216ENST00000552909 CST9Q5W186 159 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 USP48Q86UV5 1035 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 DNAJC5GQ8N7S2 189 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 ZDHHC9Q9Y397 364 aa9.05□□□□□ -0.96
LIMA1-216ENST00000552909 ADM5C9JUS6 153 aa9.04□□□□□ -0.96
LIMA1-216ENST00000552909 ST18O60284 1047 aa9.04□□□□□ -0.96
LIMA1-216ENST00000552909 FKBP1AP62942 108 aaKnown RBP9.04□□□□□ -0.96
LIMA1-216ENST00000552909 C17orf53Q8N3J3 647 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-216ENST00000552909 TTC12Q9H892 705 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-216ENST00000552909 AKAP2Q9Y2D5 859 aa9.04□□□□□ -0.96
LIMA1-216ENST00000552909 CCDC66A2RUB6 948 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 RIOK3O14730 519 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 RASGRF1Q13972 1273 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 PRAMEF18Q5VWM3 479 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 PI16Q6UXB8 463 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 CDC37L1Q7L3B6 337 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 KRT26Q7Z3Y9 468 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 ZGPATQ8N5A5 531 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 ZBED3Q96IU2 234 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 PRMT6Q96LA8 375 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 LRRCC1Q9C099 1032 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 TTF2Q9UNY4 1162 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 ZBTB22O15209 634 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 CTIFO43310 598 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 RAB11FIP3O75154 756 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 CFAP100Q494V2 611 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 TNNI3KQ59H18 835 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 DCPSQ96C86 337 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 EAF2Q96CJ1 260 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 DBNDD2Q9BQY9 259 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 CCDC8Q9H0W5 538 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 IL1RAPL2Q9NP60 686 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 TLR7Q9NYK1 1049 aaKnown RBP9.03□□□□□ -0.96
LIMA1-216ENST00000552909 HDAC9Q9UKV0 1011 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 FPGT-TNNI3KV9GXZ4 949 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 MYH13Q9UKX3 1938 aa9.03□□□□□ -0.96
LIMA1-216ENST00000552909 TMEM88BA6NKF7 163 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms