RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 CLSTN1O94985 981 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 ADH6P28332 368 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 RPL6Q02878 288 aaKnown RBP9□□□□□ -0.97
LIMA1-210ENST00000552045 PTPN11Q06124 597 aaPredicted RBP9□□□□□ -0.97
LIMA1-210ENST00000552045 PDZD3Q86UT5 571 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 RBBP8NLQ8NC74 664 aaPredicted RBP9□□□□□ -0.97
LIMA1-210ENST00000552045 TTC9Q92623 222 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 CCDC113Q9H0I3 377 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 ACTR10Q9NZ32 417 aa9□□□□□ -0.97
LIMA1-210ENST00000552045 CCDC85CA6NKD9 419 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 SOX1O00570 391 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-210ENST00000552045 TRIM37O94972 964 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 ARAFP10398 606 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 MX2P20592 715 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 CDC27P30260 824 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 CABP4P57796 275 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 AP3B2Q13367 1082 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 DDR2Q16832 855 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 EHMT1Q9H9B1 1298 aa8.99□□□□□ -0.97
LIMA1-210ENST00000552045 H3BM21 787 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 EPHA1P21709 976 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 GDF6Q6KF10 455 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-210ENST00000552045 PSAPL1Q6NUJ1 521 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 MPRIPQ6WCQ1 1025 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 LSRQ86X29 649 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-210ENST00000552045 CACTIN-AS1Q8N1I8 211 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 POLR3KQ9Y2Y1 108 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-210ENST00000552045 PCDHB14Q9Y5E9 798 aa8.98□□□□□ -0.97
LIMA1-210ENST00000552045 H3BRJ5 948 aa8.97□□□□□ -0.97
LIMA1-210ENST00000552045 TERTO14746 1132 aaKnown RBP8.97□□□□□ -0.97
LIMA1-210ENST00000552045 ATE1O95260 518 aa8.97□□□□□ -0.97
LIMA1-210ENST00000552045 GSTP1P09211 210 aaKnown RBP8.97□□□□□ -0.97
LIMA1-210ENST00000552045 MAP1SQ66K74 1059 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-210ENST00000552045 FCHSD1Q86WN1 690 aa8.97□□□□□ -0.97
LIMA1-210ENST00000552045 ST7Q9NRC1 585 aa8.97□□□□□ -0.97
LIMA1-210ENST00000552045 CACNA2D2Q9NY47 1150 aa8.97□□□□□ -0.97
LIMA1-210ENST00000552045 CASP7P55210 303 aa8.96□□□□□ -0.98
LIMA1-210ENST00000552045 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-210ENST00000552045 TNKS2Q9H2K2 1166 aa8.96□□□□□ -0.98
LIMA1-210ENST00000552045 SOX17Q9H6I2 414 aaPredicted RBP8.96□□□□□ -0.98
LIMA1-210ENST00000552045 ELOA3CA0A087WX78 387 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-210ENST00000552045 ELOA3DA6NLF2 546 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-210ENST00000552045 NEURL1BA8MQ27 555 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 GRIN3BO60391 1043 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 RGS9O75916 674 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-210ENST00000552045 VSIG8P0DPA2 414 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 GAS6Q14393 721 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 FXNQ16595 210 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 ELOA3BQ3SY89 546 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 ELOA3Q8NG57 546 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 KCNB2Q92953 911 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 DNAJC7Q99615 494 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 MAPK8IP1Q9UQF2 711 aa8.95□□□□□ -0.98
LIMA1-210ENST00000552045 PDPK1O15530 556 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 CHMP4BP1P59074 171 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 GSTM4Q03013 218 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 IFRD2Q12894 506 aaPredicted RBP8.94□□□□□ -0.98
LIMA1-210ENST00000552045 RASGRF1Q13972 1273 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 HGSNATQ68CP4 663 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 LILRB2Q8N423 598 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 IL22RA1Q8N6P7 574 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 SH3TC2Q8TF17 1288 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 SLC16A10Q8TF71 515 aa8.94□□□□□ -0.98
LIMA1-210ENST00000552045 NSFL1CQ9UNZ2 370 aaKnown RBP8.94□□□□□ -0.98
LIMA1-210ENST00000552045 EIF4EBP3O60516 100 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-210ENST00000552045 SELPP16109 830 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 CDC25BP30305 580 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 MAP2K3P46734 347 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 CDK8P49336 464 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 GRIK5Q16478 980 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 PPP2R5EQ16537 467 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 PLEKHG4Q58EX7 1191 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 LARP1BQ659C4 914 aaKnown RBP8.93□□□□□ -0.98
LIMA1-210ENST00000552045 C19orf47Q8N9M1 422 aaKnown RBP8.93□□□□□ -0.98
LIMA1-210ENST00000552045 GPBAR1Q8TDU6 330 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 MICAL1Q8TDZ2 1067 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 NUDT8Q8WV74 236 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 SLC7A3Q8WY07 619 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 GPATCH3Q96I76 525 aa8.93□□□□□ -0.98
LIMA1-210ENST00000552045 PRR36Q9H6K5 1346 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 GFRA2O00451 464 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 CYP11A1P05108 521 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 ALAS2P22557 587 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 PIP4K2BP78356 416 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 PTPROQ16827 1216 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 LRRFIP1Q32MZ4 808 aaKnown RBP8.92□□□□□ -0.98
LIMA1-210ENST00000552045 RUFY4Q6ZNE9 571 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 ZC3H12CQ9C0D7 883 aaKnown RBP8.92□□□□□ -0.98
LIMA1-210ENST00000552045 KANSL2Q9H9L4 492 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 GGA1Q9UJY5 639 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 PCDHA4Q9UN74 947 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 PPME1Q9Y570 386 aa8.92□□□□□ -0.98
LIMA1-210ENST00000552045 BAG6P46379 1132 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 ARL4DP49703 201 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 C19orf57Q0VDD7 668 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 RNF187Q5TA31 235 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-210ENST00000552045 WNT8BQ93098 351 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 ACSBG1Q96GR2 724 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 NRSN2Q9GZP1 204 aa8.91□□□□□ -0.98
LIMA1-210ENST00000552045 ANTXR1Q9H6X2 564 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms