RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	FNDC3A	Q9Y2H6	1198 aa	Known RBP	4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L15	C9J2P7	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L10	C9JJH3	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L13	C9JLJ4	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L12	C9JPN9	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L11	C9JVI0	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L21	D6R901	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L18	D6R9N7	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L22	D6RA61	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L17	D6RBQ6	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L19	D6RCP7	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L20	D6RJB6	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	NFKBIE	O00221	500 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	CD8B	P10966	210 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	BRD2	P25440	801 aa	Known RBP	4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	HSPA2	P54652	639 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP17L24	Q0WX57	530 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	MAP7	Q14244	749 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	ECM1	Q16610	540 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	FAM53C	Q9NYF3	392 aa		4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.22	□□□□□ -1.73
PTCH1-223	ENST00000551623	ZMYM4	Q5VZL5	1548 aa		4.21	□□□□□ -1.73
PTCH1-223	ENST00000551623	ABCA9	Q8IUA7	1624 aa		4.21	□□□□□ -1.73
PTCH1-223	ENST00000551623	FAM196B	A6NMK8	535 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	SOX1	O00570	391 aa	Predicted RBP	4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	NFIC	P08651	508 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	ACPP	P15309	386 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	MLANA	Q16655	118 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	ANKLE2	Q86XL3	938 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	PI4K2B	Q8TCG2	481 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	PPP1R16B	Q96T49	567 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	KANSL3	Q9P2N6	904 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	ABCA8	O94911	1581 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	KIAA0556	O60303	1618 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	FHOD3	Q2V2M9	1422 aa		4.21	□□□□□ -1.74
PTCH1-223	ENST00000551623	STRC	Q7RTU9	1775 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	FANCA	O15360	1455 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	MAGI2	Q86UL8	1455 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	PDE2A	O00408	941 aa	Predicted RBP	4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	RAB6A	P20340	208 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	IKBKE	Q14164	716 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	FAM26D	Q5JW98	314 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	SEMA6C	Q9H3T2	930 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	DZANK1	Q9NVP4	752 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	TFIP11	Q9UBB9	837 aa	Known RBP	4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	SALL4	Q9UJQ4	1053 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	ACTL7B	Q9Y614	415 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	ARHGEF12	Q9NZN5	1544 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	POGZ	Q7Z3K3	1410 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	KIF27	Q86VH2	1401 aa		4.2	□□□□□ -1.74
PTCH1-223	ENST00000551623	RIMS1	Q86UR5	1692 aa	Known RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	PREX1	Q8TCU6	1659 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	ZNF503-AS2	A6NEH8	195 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	ADH5	P11766	374 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	FKBP5	Q13451	457 aa	Predicted RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	OGFOD3	Q6PK18	319 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	ZSWIM9	Q86XI8	627 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	PLD6	Q8N2A8	252 aa	Known RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	FLAD1	Q8NFF5	587 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	ARX	Q96QS3	562 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	HHIP	Q96QV1	700 aa		4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	SOX17	Q9H6I2	414 aa	Predicted RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	MED1	Q15648	1581 aa	Predicted RBP	4.19	□□□□□ -1.74
PTCH1-223	ENST00000551623	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	RAD21	O60216	631 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	TRPA1	O75762	1119 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	INHBB	P09529	407 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	CD96	P40200	585 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	ZAP70	P43403	619 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	CTSW	P56202	376 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	PRKCQ	Q04759	706 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	KCNMB1	Q16558	191 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	KANK4	Q5T7N3	995 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	SEZ6L2	Q6UXD5	910 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	VN1R5	Q7Z5H4	357 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	TMEM102	Q8N9M5	508 aa	Predicted RBP	4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	NETO1	Q8TDF5	533 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	GPR152	Q8TDT2	470 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	SAP130	Q9H0E3	1048 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	ACSS3	Q9H6R3	686 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	C1GALT1	Q9NS00	363 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	TMEM63C	Q9P1W3	806 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	VAV3	Q9UKW4	847 aa		4.18	□□□□□ -1.74
PTCH1-223	ENST00000551623	CARMIL1	Q5VZK9	1371 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	CYP27C1	Q4G0S4	372 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	PDE12	Q6L8Q7	609 aa	Known RBP	4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	C16orf46	Q6P387	395 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	AMIGO3	Q86WK7	504 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	BSND	Q8WZ55	320 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	ELP3	Q9H9T3	547 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	CRIM1	Q9NZV1	1036 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	CNTN3	Q9P232	1028 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	AKNA	Q7Z591	1439 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	RICTOR	Q6R327	1708 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	SIGLEC1	Q9BZZ2	1709 aa		4.17	□□□□□ -1.74
PTCH1-223	ENST00000551623	EFCAB5	A4FU69	1503 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	NCOA1	Q15788	1441 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	UHRF1BP1	Q6BDS2	1440 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms