RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TBC1D32Q96NH3 1257 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 ELP3Q9H9T3 547 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 DZANK1Q9NVP4 752 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 SALL4Q9UJQ4 1053 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-206ENST00000550611 CAMSAP1Q5T5Y3 1602 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 MAGI2Q86UL8 1455 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 LOC100289279A0A1B0GTE1 492 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 PDE2AO00408 941 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-206ENST00000550611 CDPF1Q6NVV7 123 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 GPR152Q8TDT2 470 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 FBLIM1Q8WUP2 373 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 PRIMPOLQ96LW4 560 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 YIPF2Q9BWQ6 316 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 RICTORQ6R327 1708 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 ZFYVE16Q7Z3T8 1539 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 TRAPPC8Q9Y2L5 1435 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 CTTNBP2Q8WZ74 1663 aa5.98□□□□□ -1.45
LIMA1-206ENST00000550611 SAMD9Q5K651 1589 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 ALKQ9UM73 1620 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 FAM170BA6NMN3 283 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 FARP2O94887 1054 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 CYP27A1Q02318 531 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 ZNF124Q15973 351 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 KRTAP19-4Q3LI73 84 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 DUSP27Q5VZP5 1158 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 HGSNATQ68CP4 663 aa5.97□□□□□ -1.45
LIMA1-206ENST00000550611 PROSER2Q86WR7 435 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 C2CD4AQ8NCU7 369 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 CALR3Q96L12 384 aaKnown RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 SOX17Q9H6I2 414 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 ZC3H7BQ9UGR2 993 aaKnown RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 ACIN1Q9UKV3 1341 aaKnown RBP5.97□□□□□ -1.45
LIMA1-206ENST00000550611 ATP10AO60312 1499 aa5.96□□□□□ -1.45
LIMA1-206ENST00000550611 HECW1Q76N89 1606 aa5.96□□□□□ -1.45
LIMA1-206ENST00000550611 RAPGEF6Q8TEU7 1601 aa5.96□□□□□ -1.45
LIMA1-206ENST00000550611 ZMYM4Q5VZL5 1548 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 SOX1O00570 391 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-206ENST00000550611 EIF4EBP3O60516 100 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-206ENST00000550611 DRD2P14416 443 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 IKBKEQ14164 716 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 PKN1Q16512 942 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 EXOSC6Q5RKV6 272 aaKnown RBP5.96□□□□□ -1.46
LIMA1-206ENST00000550611 AFAP1Q8N556 730 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 TMEM63CQ9P1W3 806 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 CNTN3Q9P232 1028 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 STIM2Q9P246 746 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 KANSL3Q9P2N6 904 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 PLCH2O75038 1416 aa5.96□□□□□ -1.46
LIMA1-206ENST00000550611 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.95□□□□□ -1.46
LIMA1-206ENST00000550611 DLGAP3O95886 979 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 SOX4Q06945 474 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-206ENST00000550611 PLCL1Q15111 1095 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 ZNF792Q3KQV3 632 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 VN1R5Q7Z5H4 357 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 STK11IPQ8N1F8 1099 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 ABTB2Q8N961 1025 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 TMEM102Q8N9M5 508 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-206ENST00000550611 CCER1Q8TC90 406 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-206ENST00000550611 BCL7CQ8WUZ0 217 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-206ENST00000550611 BSNDQ8WZ55 320 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 USP26Q9BXU7 913 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 SCAPERQ9BY12 1400 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 SLC5A6Q9Y289 635 aa5.95□□□□□ -1.46
LIMA1-206ENST00000550611 C3P01024 1663 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 KRTAP9-7A8MTY7 169 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 PRMT3O60678 531 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 RPLP1P05386 114 aaKnown RBP5.94□□□□□ -1.46
LIMA1-206ENST00000550611 ACPPP15309 386 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 CES1P23141 567 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 EFCAB2Q5VUJ9 269 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 XKR5Q6UX68 686 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 ZNF438Q7Z4V0 828 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 ATG4DQ86TL0 474 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-206ENST00000550611 WFDC3Q8IUB2 231 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 HHIPQ96QV1 700 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-206ENST00000550611 EFCAB5A4FU69 1503 aa5.94□□□□□ -1.46
LIMA1-206ENST00000550611 ZBTB39O15060 712 aa5.93□□□□□ -1.46
LIMA1-206ENST00000550611 MAP7Q14244 749 aa5.93□□□□□ -1.46
LIMA1-206ENST00000550611 NXPE3Q969Y0 559 aa5.93□□□□□ -1.46
LIMA1-206ENST00000550611 LRRC4CQ9HCJ2 640 aa5.93□□□□□ -1.46
LIMA1-206ENST00000550611 NOVA2Q9UNW9 492 aaKnown RBP5.93□□□□□ -1.46
LIMA1-206ENST00000550611 C9orf84Q5VXU9 1444 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 SHANK2Q9UPX8 1470 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 RANGAP1P46060 587 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-206ENST00000550611 ZNF765Q7L2R6 523 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 KSR1Q8IVT5 923 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 C1orf127Q8N9H9 656 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 BHLHE22Q8NFJ8 381 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-206ENST00000550611 TMEM40Q8WWA1 233 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 PMEPA1Q969W9 287 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 NUDT16Q96DE0 195 aaKnown RBP5.92□□□□□ -1.46
LIMA1-206ENST00000550611 MISP3Q96FF7 219 aa5.92□□□□□ -1.46
LIMA1-206ENST00000550611 TRPA1O75762 1119 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 ADH5P11766 374 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 RFX1P22670 979 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 CFAP70Q5T0N1 1121 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 LCE5AQ5TCM9 118 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 CAPN12Q6ZSI9 719 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms