RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 PUS3Q9BZE2 481 aaKnown RBP16.16■□□□□ 0.18
SCAF11-208ENST00000546534 IQSEC3Q9UPP2 1182 aaPredicted RBP16.16■□□□□ 0.18
SCAF11-208ENST00000546534 GRM8O00222 908 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 PRKAR2AP13861 404 aaKnown RBP16.15■□□□□ 0.18
SCAF11-208ENST00000546534 OSBPP22059 807 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 GRK4P32298 578 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 HDLBPQ00341 1268 aaKnown RBP16.15■□□□□ 0.18
SCAF11-208ENST00000546534 CHAF1AQ13111 956 aaPredicted RBP16.15■□□□□ 0.18
SCAF11-208ENST00000546534 NKX2-3Q8TAU0 364 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 PRO3102Q9H379 93 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 SZT2Q5T011 3432 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 IL16Q14005 1332 aa16.15■□□□□ 0.18
SCAF11-208ENST00000546534 VAMP4O75379 141 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 GJB1P08034 283 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 CCL5P13501 91 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 GJA8P48165 433 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 FBXO33Q7Z6M2 555 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.14■□□□□ 0.17
SCAF11-208ENST00000546534 RAET1EQ8TD07 263 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 TEKT1Q969V4 418 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 HTATIP2Q9BUP3 242 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 RIPOR2Q9Y4F9 1068 aa16.14■□□□□ 0.17
SCAF11-208ENST00000546534 FMNL1O95466 1100 aaPredicted RBP16.13■□□□□ 0.17
SCAF11-208ENST00000546534 HOXD10P28358 340 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 PPATQ06203 517 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 ANKRD23Q86SG2 305 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 FAM83AQ86UY5 434 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 HOOK2Q96ED9 719 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 TMOD2Q9NZR1 351 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 FANCIQ9NVI1 1328 aa16.13■□□□□ 0.17
SCAF11-208ENST00000546534 PDHXO00330 501 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 DLL1O00548 723 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 INPP5BP32019 993 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 FKBP1CQ5VVH2 108 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 DCAF15Q66K64 600 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 APOBEC3HQ6NTF7 200 aaKnown RBP16.12■□□□□ 0.17
SCAF11-208ENST00000546534 MIGA2Q7L4E1 593 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 VPS37DQ86XT2 251 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 TBC1D22AQ8WUA7 517 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 ZDHHC15Q96MV8 337 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 RNF208Q9H0X6 261 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 BIN2Q9UBW5 565 aaPredicted RBP16.12■□□□□ 0.17
SCAF11-208ENST00000546534 MYPNQ86TC9 1320 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 ADGRA2Q96PE1 1338 aa16.12■□□□□ 0.17
SCAF11-208ENST00000546534 FRAT2O75474 233 aaPredicted RBP16.11■□□□□ 0.17
SCAF11-208ENST00000546534 SLC17A8Q8NDX2 589 aa16.11■□□□□ 0.17
SCAF11-208ENST00000546534 MRIQ9BWK5 157 aa16.11■□□□□ 0.17
SCAF11-208ENST00000546534 ZNF341Q9BYN7 854 aa16.11■□□□□ 0.17
SCAF11-208ENST00000546534 C9orf78Q9NZ63 289 aaPredicted RBP16.11■□□□□ 0.17
SCAF11-208ENST00000546534 KCNH4Q9UQ05 1017 aa16.11■□□□□ 0.17
SCAF11-208ENST00000546534 NR2E3Q9Y5X4 410 aa16.11■□□□□ 0.17
SCAF11-208ENST00000546534 ZBTB7BO15156 539 aaPredicted RBP16.1■□□□□ 0.17
SCAF11-208ENST00000546534 PRKCZQ05513 592 aa16.1■□□□□ 0.17
SCAF11-208ENST00000546534 EXOSC9Q06265 439 aaKnown RBP16.1■□□□□ 0.17
SCAF11-208ENST00000546534 MOGSQ13724 837 aa16.1■□□□□ 0.17
SCAF11-208ENST00000546534 U2AF1L4Q8WU68 220 aaKnown RBP16.1■□□□□ 0.17
SCAF11-208ENST00000546534 KAZALD1Q96I82 304 aa16.1■□□□□ 0.17
SCAF11-208ENST00000546534 SUCLG2Q96I99 432 aa16.1■□□□□ 0.17
SCAF11-208ENST00000546534 MROH5Q6ZUA9 1318 aa16.1■□□□□ 0.17
SCAF11-208ENST00000546534 RANBP2P49792 3224 aaKnown RBP16.09■□□□□ 0.17
SCAF11-208ENST00000546534 FARP2O94887 1054 aaPredicted RBP16.09■□□□□ 0.17
SCAF11-208ENST00000546534 BCAMP50895 628 aa16.09■□□□□ 0.17
SCAF11-208ENST00000546534 UBXN2AP68543 259 aa16.09■□□□□ 0.17
SCAF11-208ENST00000546534 CCDC184Q52MB2 194 aa16.09■□□□□ 0.17
SCAF11-208ENST00000546534 CAVIN4Q5BKX8 364 aa16.09■□□□□ 0.17
SCAF11-208ENST00000546534 RPAP1Q9BWH6 1393 aaPredicted RBP16.09■□□□□ 0.17
SCAF11-208ENST00000546534 SOX1O00570 391 aaPredicted RBP16.08■□□□□ 0.16
SCAF11-208ENST00000546534 ALDH1L1O75891 902 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 LRRC24Q50LG9 513 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 HHIPL2Q6UWX4 724 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 UNC93B1Q9H1C4 597 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 ZNF112Q9UJU3 913 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 GABRQQ9UN88 632 aa16.08■□□□□ 0.16
SCAF11-208ENST00000546534 HAX1O00165 279 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 SGPL1O95470 568 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 BCRP11274 1271 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 FCGRTP55899 365 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 METTL24Q5JXM2 366 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 SLC4A10Q6U841 1118 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 VGLL2Q8N8G2 317 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 SP7Q8TDD2 431 aaPredicted RBP16.07■□□□□ 0.16
SCAF11-208ENST00000546534 FAM151AQ8WW52 585 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 SRCIN1Q9C0H9 1055 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 FARP1Q9Y4F1 1045 aaPredicted RBP16.07■□□□□ 0.16
SCAF11-208ENST00000546534 MAST3O60307 1309 aa16.07■□□□□ 0.16
SCAF11-208ENST00000546534 CACNA1FO60840 1977 aa16.06■□□□□ 0.16
SCAF11-208ENST00000546534 NBPF7P0C2Y1 421 aaPredicted RBP16.06■□□□□ 0.16
SCAF11-208ENST00000546534 CYP2C8P10632 490 aa16.06■□□□□ 0.16
SCAF11-208ENST00000546534 GPAT2Q6NUI2 795 aa16.06■□□□□ 0.16
SCAF11-208ENST00000546534 SLAIN1Q8ND83 568 aa16.06■□□□□ 0.16
SCAF11-208ENST00000546534 SUGT1Q9Y2Z0 365 aa16.06■□□□□ 0.16
SCAF11-208ENST00000546534 A0A1W2PPC1 479 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 ADCY3O60266 1144 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 EVI5O60447 810 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 PDE8BO95263 885 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 NUBP1P53384 320 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 TCP10Q12799 353 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 NOL9Q5SY16 702 aaKnown RBP16.05■□□□□ 0.16
SCAF11-208ENST00000546534 LRCH3Q96II8 777 aa16.05■□□□□ 0.16
SCAF11-208ENST00000546534 PARK7Q99497 189 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms