RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MTX1Q13505 466 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 NSUN7Q8NE18 718 aaKnown RBP17.91■□□□□ 0.46
CUX1-211ENST00000546411 SMARCC1Q92922 1105 aaPredicted RBP17.91■□□□□ 0.46
CUX1-211ENST00000546411 TRIM47Q96LD4 638 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 CLIC4Q9Y696 253 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 CCDC181Q5TID7 509 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 KANK3Q6NY19 840 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 AIFM3Q96NN9 605 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 PCDHA7Q9UN72 937 aa17.91■□□□□ 0.46
CUX1-211ENST00000546411 CCDC102AQ96A19 550 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 VPS54Q9P1Q0 977 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 STAT6P42226 847 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 MYL5Q02045 173 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 CCDC178Q5BJE1 867 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 TRMT44Q8IYL2 757 aaKnown RBP17.9■□□□□ 0.46
CUX1-211ENST00000546411 ZNF274Q96GC6 653 aaPredicted RBP17.9■□□□□ 0.46
CUX1-211ENST00000546411 CLIC6Q96NY7 704 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 ACBD3Q9H3P7 528 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 OVOS2A0A0J9YW53 1432 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 OVOS2Q6IE36 1432 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 SPTY2D1Q68D10 685 aaPredicted RBP17.9■□□□□ 0.46
CUX1-211ENST00000546411 GIGYF2Q6Y7W6 1299 aaKnown RBP17.9■□□□□ 0.46
CUX1-211ENST00000546411 RTCBQ9Y3I0 505 aaKnown RBP17.9■□□□□ 0.46
CUX1-211ENST00000546411 PDE8BO95263 885 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 PTPN21Q16825 1174 aa17.9■□□□□ 0.46
CUX1-211ENST00000546411 ELP1O95163 1332 aa17.89■□□□□ 0.46
CUX1-211ENST00000546411 ADAMTS13Q76LX8 1427 aa17.89■□□□□ 0.46
CUX1-211ENST00000546411 FAM47AQ5JRC9 791 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 PIGBQ92521 554 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 LZTFL1Q9NQ48 299 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 CD163L1Q9NR16 1453 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 BTBD18B2RXH4 712 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 RIMBP2O15034 1052 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 NDUFA8P51970 172 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 PYCARDQ9ULZ3 195 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 TAF6LQ9Y6J9 622 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 WDR17Q8IZU2 1322 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 ZC3H13Q5T200 1668 aaKnown RBP17.89■□□□□ 0.45
CUX1-211ENST00000546411 KRT2P35908 639 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 PNOCQ13519 176 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 ZNF827Q17R98 1081 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 AKNAD1Q5T1N1 836 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 FAM182BQ5T319 152 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 ATL3Q6DD88 541 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 TTC14Q96N46 770 aa17.89■□□□□ 0.45
CUX1-211ENST00000546411 TOB2Q14106 344 aaPredicted RBP17.88■□□□□ 0.45
CUX1-211ENST00000546411 HLFQ16534 295 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 IFNL3Q8IZI9 196 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 CLTCQ00610 1675 aaKnown RBP17.88■□□□□ 0.45
CUX1-211ENST00000546411 CCT6AP40227 531 aaKnown RBP17.88■□□□□ 0.45
CUX1-211ENST00000546411 NAPAP54920 295 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 CT47A1Q5JQC4 288 aaPredicted RBP17.88■□□□□ 0.45
CUX1-211ENST00000546411 MRVI1Q9Y6F6 885 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 MAP3K15Q6ZN16 1313 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 PIK3AP1Q6ZUJ8 805 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 CACNA2D4Q7Z3S7 1137 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 FBXO18Q8NFZ0 1043 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 ZNF622Q969S3 477 aaKnown RBP eCLIP17.88■□□□□ 0.451e-7■■□□□ 13.1
CUX1-211ENST00000546411 UIMC1Q96RL1 719 aa17.88■□□□□ 0.45
CUX1-211ENST00000546411 PFKFB1P16118 471 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 FANCCQ00597 558 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 TDRD12Q587J7 1177 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 CGNQ9P2M7 1197 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 HEG1Q9ULI3 1381 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 USP17L12C9JPN9 530 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 USP17L21D6R901 530 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 LDHBP07195 334 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 HIBADHP31937 336 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 EIF6P56537 245 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 XPO4Q9C0E2 1151 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 SEPT11Q9NVA2 429 aaKnown RBP17.87■□□□□ 0.45
CUX1-211ENST00000546411 KIAA1210Q9ULL0 1709 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 PRKAB2O43741 272 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 PARP10Q53GL7 1025 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 CARD10Q9BWT7 1032 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 YEATS4O95619 227 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 ZFYVE27Q5T4F4 411 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 INCENPQ9NQS7 918 aa17.87■□□□□ 0.45
CUX1-211ENST00000546411 NBPF26B4DH59 902 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 DEXIO95424 95 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 RILPL1Q5EBL4 403 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 FKBP15Q5T1M5 1219 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 NBPF14Q5TI25 921 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 ADALQ6DHV7 355 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 NBPF10Q6P3W6 841 aaKnown RBP17.86■□□□□ 0.45
CUX1-211ENST00000546411 NBPF15Q8N660 670 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 KIAA1468Q9P260 1216 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 TRIM21P19474 475 aaKnown RBP17.86■□□□□ 0.45
CUX1-211ENST00000546411 ERLIN1O75477 346 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 GPIHBP1Q8IV16 184 aa17.86■□□□□ 0.45
CUX1-211ENST00000546411 PATL2C9JE40 543 aaKnown RBP17.85■□□□□ 0.45
CUX1-211ENST00000546411 H7C1W4 665 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 ERCC3P19447 782 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 SPA17Q15506 151 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 ANKARQ7Z5J8 1434 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 TRERF1Q96PN7 1200 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 CENPHQ9H3R5 247 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 NFE2L3Q9Y4A8 694 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 TMEM266Q2M3C6 531 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 NLRP10Q86W26 655 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms