RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 PHKA1P46020 1223 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 SOX10P56693 466 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 CRHR2Q13324 411 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 CCDC102BQ68D86 513 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 FAM151AQ8WW52 585 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 OTUD5Q96G74 571 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 ZNF341Q9BYN7 854 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 R3HDMLQ9H3Y0 253 aa16.25■□□□□ 0.19
RTN3-212ENST00000543123 CCL15-CCL14A0A0B4J2E2 113 aa16.24■□□□□ 0.19
RTN3-212ENST00000543123 ARHGEF6Q15052 776 aa16.24■□□□□ 0.19
RTN3-212ENST00000543123 DIXDC1Q155Q3 683 aa16.24■□□□□ 0.19
RTN3-212ENST00000543123 CCL15Q16663 113 aa16.24■□□□□ 0.19
RTN3-212ENST00000543123 SPTY2D1Q68D10 685 aaPredicted RBP16.24■□□□□ 0.19
RTN3-212ENST00000543123 ERO1BQ86YB8 467 aa16.24■□□□□ 0.19
RTN3-212ENST00000543123 DZIP1Q86YF9 867 aaKnown RBP16.24■□□□□ 0.19
RTN3-212ENST00000543123 CETPP11597 493 aa16.23■□□□□ 0.19
RTN3-212ENST00000543123 MS4A4AQ96JQ5 239 aa16.23■□□□□ 0.19
RTN3-212ENST00000543123 ZFYVE28Q9HCC9 887 aa16.23■□□□□ 0.19
RTN3-212ENST00000543123 ZCCHC17Q9NP64 241 aaKnown RBP16.23■□□□□ 0.19
RTN3-212ENST00000543123 TRIM17Q9Y577 477 aa16.23■□□□□ 0.19
RTN3-212ENST00000543123 SNCAIPQ9Y6H5 919 aa16.23■□□□□ 0.19
RTN3-212ENST00000543123 A0A1B0GUL7 405 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 ADORA1P30542 326 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 HNRNPUQ00839 825 aaKnown RBP eCLIP16.22■□□□□ 0.19
RTN3-212ENST00000543123 SP3Q02447 781 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 PPIL2Q13356 520 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 SNAPC2Q13487 334 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 GORABQ5T7V8 394 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 ZKSCAN2Q63HK3 967 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 CDC42EP5Q6NZY7 148 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 BRI3BPQ8WY22 251 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 PTPN18Q99952 460 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 USP40Q9NVE5 1235 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 HTTP42858 3142 aa16.22■□□□□ 0.19
RTN3-212ENST00000543123 TNRC18O15417 2968 aaPredicted RBP16.22■□□□□ 0.19
RTN3-212ENST00000543123 BCAR3O75815 825 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 TIMM10P62072 90 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 TCP10Q12799 353 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 TFCP2Q12800 502 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 RASGRF1Q13972 1273 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 TAF1CQ15572 869 aaPredicted RBP16.21■□□□□ 0.19
RTN3-212ENST00000543123 OTOP1Q7RTM1 612 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 CNKSR2Q8WXI2 1034 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 ZKSCAN4Q969J2 545 aaPredicted RBP16.21■□□□□ 0.19
RTN3-212ENST00000543123 XAGE2Q96GT9 111 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 ABCF2Q9UG63 623 aa16.21■□□□□ 0.19
RTN3-212ENST00000543123 GAKO14976 1311 aa16.2■□□□□ 0.18
RTN3-212ENST00000543123 PPATQ06203 517 aa16.2■□□□□ 0.18
RTN3-212ENST00000543123 G3BP1Q13283 466 aaKnown RBP eCLIP16.2■□□□□ 0.18
RTN3-212ENST00000543123 FTSJ3Q8IY81 847 aaKnown RBP16.2■□□□□ 0.18
RTN3-212ENST00000543123 CLUAP1Q96AJ1 413 aa16.2■□□□□ 0.18
RTN3-212ENST00000543123 NEUROD6Q96NK8 337 aa16.2■□□□□ 0.18
RTN3-212ENST00000543123 EFCC1Q9HA90 598 aa16.2■□□□□ 0.18
RTN3-212ENST00000543123 ENTPD3O75355 529 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 NFIAQ12857 509 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 MIGA2Q7L4E1 593 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 CD99L2Q8TCZ2 262 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 IDI2Q9BXS1 227 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 AK9Q5TCS8 1911 aa16.19■□□□□ 0.18
RTN3-212ENST00000543123 MYH2Q9UKX2 1941 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 IRF6O14896 467 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 GSTO1P78417 241 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 ERICH6Q7L0X2 663 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 FAM163AQ96GL9 167 aaPredicted RBP16.18■□□□□ 0.18
RTN3-212ENST00000543123 FAM198AQ9UFP1 575 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 ZNF112Q9UJU3 913 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 CENPFP49454 3210 aa16.18■□□□□ 0.18
RTN3-212ENST00000543123 PDE4DIPQ5VU43 2346 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 MAP4K4O95819 1239 aaPredicted RBP16.17■□□□□ 0.18
RTN3-212ENST00000543123 KIF22Q14807 665 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 NOL9Q5SY16 702 aaKnown RBP16.17■□□□□ 0.18
RTN3-212ENST00000543123 DIEXFQ68CQ4 756 aaKnown RBP16.17■□□□□ 0.18
RTN3-212ENST00000543123 ZSCAN29Q8IWY8 852 aaPredicted RBP16.17■□□□□ 0.18
RTN3-212ENST00000543123 FAM43AQ8N2R8 423 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 TMEM57Q8N5G2 664 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 SPATA5Q8NB90 893 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 PTPN22Q9Y2R2 807 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 DOCK2Q92608 1830 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 MROH7-TTC4A0A0A0MT08 1334 aa16.17■□□□□ 0.18
RTN3-212ENST00000543123 PNMA6EA0A0J9YXQ4 647 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 LDHCP07864 332 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 UQCRFS1P1P0C7P4 283 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 INPP5BP32019 993 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 RGS3P49796 1198 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 OS9Q13438 667 aaPredicted RBP16.16■□□□□ 0.18
RTN3-212ENST00000543123 PICK1Q9NRD5 415 aa16.16■□□□□ 0.18
RTN3-212ENST00000543123 RFX7Q2KHR2 1363 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 BTBD19C9JJ37 291 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 TLR2O60603 784 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 ARID4AP29374 1257 aaPredicted RBP16.15■□□□□ 0.18
RTN3-212ENST00000543123 BTDP43251 543 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 MECOMQ03112 1051 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 MIER1Q8N108 512 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 GPR108Q9NPR9 543 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 HMG20BQ9P0W2 317 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 KCNH4Q9UQ05 1017 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 TNNQ9UQP3 1299 aa16.15■□□□□ 0.18
RTN3-212ENST00000543123 GNRH1P01148 92 aa16.14■□□□□ 0.17
RTN3-212ENST00000543123 ANKRD23Q86SG2 305 aa16.14■□□□□ 0.17
RTN3-212ENST00000543123 ITPRIPQ8IWB1 547 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms