RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 RBM26Q5T8P6 1007 aaKnown RBP14.71□□□□□ -0.05
DDX55-210ENST00000543016 APOBEC3HQ6NTF7 200 aaKnown RBP14.71□□□□□ -0.05
DDX55-210ENST00000543016 TRPM4Q8TD43 1214 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 EDC3Q96F86 508 aaKnown RBP14.71□□□□□ -0.05
DDX55-210ENST00000543016 PRMT6Q96LA8 375 aaPredicted RBP14.71□□□□□ -0.05
DDX55-210ENST00000543016 TMOD2Q9NZR1 351 aa14.71□□□□□ -0.05
DDX55-210ENST00000543016 KIF3CO14782 793 aa14.7□□□□□ -0.06
DDX55-210ENST00000543016 HIRAP54198 1017 aaPredicted RBP14.7□□□□□ -0.06
DDX55-210ENST00000543016 TNFAIP1Q13829 316 aa14.7□□□□□ -0.06
DDX55-210ENST00000543016 SPDYE2Q495Y8 402 aa14.7□□□□□ -0.06
DDX55-210ENST00000543016 EAPPQ56P03 285 aaPredicted RBP14.7□□□□□ -0.06
DDX55-210ENST00000543016 APOBEC3FQ8IUX4 373 aaKnown RBP14.7□□□□□ -0.06
DDX55-210ENST00000543016 ZNF384Q8TF68 577 aa14.7□□□□□ -0.06
DDX55-210ENST00000543016 ZNF532Q9HCE3 1301 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 TCRBV5S4A2TA0A5A2 114 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 TOMM70O94826 608 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 BTDP43251 543 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 RGS3P49796 1198 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 NBPF9Q3BBW0 867 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 APPBP2Q92624 585 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 RILPL2Q969X0 211 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 DCPSQ96C86 337 aaKnown RBP14.69□□□□□ -0.06
DDX55-210ENST00000543016 CLEC11AQ9Y240 323 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 PPP2R3BQ9Y5P8 575 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 DOCK2Q92608 1830 aa14.69□□□□□ -0.06
DDX55-210ENST00000543016 EGFRP00533 1210 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 TNNI2P48788 182 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 CHADLQ6NUI6 762 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 SAMD1Q6SPF0 538 aaPredicted RBP14.68□□□□□ -0.06
DDX55-210ENST00000543016 CDC37L1Q7L3B6 337 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 RBM46Q8TBY0 533 aaKnown RBP14.68□□□□□ -0.06
DDX55-210ENST00000543016 USP40Q9NVE5 1235 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 ZNF70Q9UC06 446 aaPredicted RBP14.68□□□□□ -0.06
DDX55-210ENST00000543016 MAST2Q6P0Q8 1798 aa14.68□□□□□ -0.06
DDX55-210ENST00000543016 MAGEB6P1A0A0J9YX57 407 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 GSPT1P15170 499 aaKnown RBP14.67□□□□□ -0.06
DDX55-210ENST00000543016 SDSP20132 328 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 ZMYM1Q5SVZ6 1142 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 CDC42EP5Q6NZY7 148 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 FAM83AQ86UY5 434 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 SULF1Q8IWU6 871 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 SMC1BQ8NDV3 1235 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 IDI2Q9BXS1 227 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 TDRD3Q9H7E2 651 aaKnown RBP14.67□□□□□ -0.06
DDX55-210ENST00000543016 HELLSQ9NRZ9 838 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 GGA3Q9NZ52 723 aa14.67□□□□□ -0.06
DDX55-210ENST00000543016 MYH2Q9UKX2 1941 aa14.66□□□□□ -0.06
DDX55-210ENST00000543016 ENTPD3O75355 529 aa14.66□□□□□ -0.06
DDX55-210ENST00000543016 RHBDL3P58872 404 aa14.66□□□□□ -0.06
DDX55-210ENST00000543016 FSTL1Q12841 308 aa14.66□□□□□ -0.06
DDX55-210ENST00000543016 ANGEL2Q5VTE6 544 aaKnown RBP14.66□□□□□ -0.06
DDX55-210ENST00000543016 AIDAQ96BJ3 306 aa14.66□□□□□ -0.06
DDX55-210ENST00000543016 AATFQ9NY61 560 aaKnown RBP eCLIP14.66□□□□□ -0.06
DDX55-210ENST00000543016 GNAT2P19087 354 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 MFAP1P55081 439 aaKnown RBP14.65□□□□□ -0.06
DDX55-210ENST00000543016 KRT26Q7Z3Y9 468 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 ADGRA1Q86SQ6 560 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 TEX11Q8IYF3 940 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 RUFY2Q8WXA3 655 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 RIOK1Q9BRS2 568 aaKnown RBP14.65□□□□□ -0.06
DDX55-210ENST00000543016 CRNKL1Q9BZJ0 848 aaKnown RBP14.65□□□□□ -0.06
DDX55-210ENST00000543016 DIAPH3Q9NSV4 1193 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 PCDHAC2Q9Y5I4 1007 aa14.65□□□□□ -0.06
DDX55-210ENST00000543016 RPAP1Q9BWH6 1393 aaPredicted RBP14.64□□□□□ -0.07
DDX55-210ENST00000543016 CLRN2A0PK11 232 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 DSG3P32926 999 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 MCMDC2Q4G0Z9 681 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 MIGA1Q8NAN2 632 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 HOOK2Q96ED9 719 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 VEZTQ9HBM0 779 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 ADAMTSL1Q8N6G6 1762 aa14.64□□□□□ -0.07
DDX55-210ENST00000543016 WDHD1O75717 1129 aaPredicted RBP14.63□□□□□ -0.07
DDX55-210ENST00000543016 GIMAP6Q6P9H5 292 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 CASC1Q6TDU7 716 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 SH3RF3Q8TEJ3 882 aaPredicted RBP14.63□□□□□ -0.07
DDX55-210ENST00000543016 FAM151AQ8WW52 585 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 OSBP2Q969R2 916 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 DDRGK1Q96HY6 314 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 STRBPQ96SI9 672 aaKnown RBP14.63□□□□□ -0.07
DDX55-210ENST00000543016 PUS7LQ9H0K6 701 aaKnown RBP14.63□□□□□ -0.07
DDX55-210ENST00000543016 DEFB129Q9H1M3 183 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 ATP8A2Q9NTI2 1148 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 TAOK2Q9UL54 1235 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 RAD50Q92878 1312 aa14.63□□□□□ -0.07
DDX55-210ENST00000543016 MYH7P12883 1935 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 MBD4O95243 580 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 POTEIP0CG38 1075 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 POTEJP0CG39 1038 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 RASA3Q14644 834 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 SUPT20HL1Q3ZLR7 823 aa14.62□□□□□ -0.07
DDX55-210ENST00000543016 MAP1SQ66K74 1059 aaPredicted RBP14.62□□□□□ -0.07
DDX55-210ENST00000543016 DHX36Q9H2U1 1008 aaKnown RBP14.62□□□□□ -0.07
DDX55-210ENST00000543016 MYO5AQ9Y4I1 1855 aaKnown RBP14.62□□□□□ -0.07
DDX55-210ENST00000543016 ASTN2O75129 1339 aaPredicted RBP14.62□□□□□ -0.07
DDX55-210ENST00000543016 TCP10L2B9ZVM9 353 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 GPAA1O43292 621 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 EIF5BO60841 1220 aaKnown RBP14.61□□□□□ -0.07
DDX55-210ENST00000543016 ITGBL1O95965 494 aaPredicted RBP14.61□□□□□ -0.07
DDX55-210ENST00000543016 CHMLP26374 656 aa14.61□□□□□ -0.07
DDX55-210ENST00000543016 NF2P35240 595 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms