RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	MTMR14	Q8NCE2	650 aa		13.99	□□□□□ -0.17
YBX3-213	ENST00000542641	DAGLA	Q9Y4D2	1042 aa		13.99	□□□□□ -0.17
YBX3-213	ENST00000542641	PCDHAC2	Q9Y5I4	1007 aa		13.99	□□□□□ -0.17
YBX3-213	ENST00000542641	GAK	O14976	1311 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	GPR75-ASB3	A0A0A6YYF3	556 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	BAG3	O95817	575 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	BTD	P43251	543 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	USP50	Q70EL3	339 aa	Predicted RBP	13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	ADGRA1	Q86SQ6	560 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	MIGA1	Q8NAN2	632 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	TRPM4	Q8TD43	1214 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	APPBP2	Q92624	585 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	PRMT6	Q96LA8	375 aa	Predicted RBP	13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	NMRK2	Q9NPI5	230 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	DIAPH3	Q9NSV4	1193 aa		13.98	□□□□□ -0.17
YBX3-213	ENST00000542641	MAGEB6P1	A0A0J9YX57	407 aa		13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	WNT10B	O00744	389 aa		13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	MYO1B	O43795	1136 aa		13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	HIRA	P54198	1017 aa	Predicted RBP	13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	NBPF9	Q3BBW0	867 aa		13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	ZMYM1	Q5SVZ6	1142 aa		13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	PNMA8A	Q86V59	439 aa	Predicted RBP	13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	ZBED3	Q96IU2	234 aa	Predicted RBP	13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
YBX3-213	ENST00000542641	RFX7	Q2KHR2	1363 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	WDR90	Q96KV7	1748 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	PPP4C	P60510	307 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	DYNLL1	P63167	89 aa	Known RBP	13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	NMI	Q13287	307 aa	Predicted RBP	13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	EAPP	Q56P03	285 aa	Predicted RBP	13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	OSBP2	Q969R2	916 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	AIDA	Q96BJ3	306 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	FAM227B	Q96M60	508 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	PUS7L	Q9H0K6	701 aa	Known RBP	13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	TDRD3	Q9H7E2	651 aa	Known RBP	13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	USP40	Q9NVE5	1235 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	DOCK2	Q92608	1830 aa		13.96	□□□□□ -0.17
YBX3-213	ENST00000542641	PLCG2	P16885	1265 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	CHML	P26374	656 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	CDC42EP5	Q6NZY7	148 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	CWC27	Q6UX04	472 aa	Known RBP	13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	CHRDL2	Q6WN34	429 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	CERS3	Q8IU89	383 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	SEC62	Q99442	399 aa	Known RBP	13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	HELLS	Q9NRZ9	838 aa		13.95	□□□□□ -0.18
YBX3-213	ENST00000542641	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.95	□□□□□ -0.18
YBX3-213	ENST00000542641		A0A0D9SFI3	127 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	CLRN2	A0PK11	232 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641		M0R2C6	588 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	CDC45	O75419	566 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	MBD4	O95243	580 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	MCMDC2	Q4G0Z9	681 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	CASC1	Q6TDU7	716 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	RIOK1	Q9BRS2	568 aa	Known RBP	13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	ARMT1	Q9H993	441 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	TMOD2	Q9NZR1	351 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	ZNF70	Q9UC06	446 aa	Predicted RBP	13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	MAST2	Q6P0Q8	1798 aa		13.94	□□□□□ -0.18
YBX3-213	ENST00000542641	ASTN2	O75129	1339 aa	Predicted RBP	13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	SCN4A	P35499	1836 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	GPAA1	O43292	621 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	CACNB3	P54284	484 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	RHBDL3	P58872	404 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	ANGEL2	Q5VTE6	544 aa	Known RBP	13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	TEX11	Q8IYF3	940 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	LCORL	Q8N3X6	602 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	ZC3H15	Q8WU90	426 aa	Known RBP	13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	RUFY2	Q8WXA3	655 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	VEZT	Q9HBM0	779 aa		13.93	□□□□□ -0.18
YBX3-213	ENST00000542641	MYH2	Q9UKX2	1941 aa		13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	PRR29	P0C7W0	189 aa		13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	CCDC129	Q6ZRS4	1044 aa		13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	DCPS	Q96C86	337 aa	Known RBP	13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	STRBP	Q96SI9	672 aa	Known RBP	13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	GGA3	Q9NZ52	723 aa		13.92	□□□□□ -0.18
YBX3-213	ENST00000542641	ADAMTSL1	Q8N6G6	1762 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	TCP10L2	B9ZVM9	353 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	WDHD1	O75717	1129 aa	Predicted RBP	13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	POTEI	P0CG38	1075 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	POTEJ	P0CG39	1038 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	GNAT2	P19087	354 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	USP5	P45974	858 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	MFAP1	P55081	439 aa	Known RBP	13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	PICALM	Q13492	652 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	FKBP1C	Q5VVH2	108 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	TGFBRAP1	Q8WUH2	860 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	PGAP2	Q9UHJ9	254 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	SLC4A4	Q9Y6R1	1079 aa		13.91	□□□□□ -0.18
YBX3-213	ENST00000542641	PRKAB2	O43741	272 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	APP	P05067	770 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	TNNI2	P48788	182 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	NFIA	Q12857	509 aa		13.9	□□□□□ -0.18
YBX3-213	ENST00000542641	TNFAIP1	Q13829	316 aa		13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms