RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 CLASRPQ8N2M8 674 aaKnown RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 MRFAP1L1Q96HT8 127 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 LARP6Q9BRS8 491 aaKnown RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 TMEM165Q9HC07 324 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 NDUFB9Q9Y6M9 179 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 IPO5O00410 1097 aaKnown RBP12.79□□□□□ -0.36
CDH3-203ENST00000542274 KCNQ2O43526 872 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 KIF4AO95239 1232 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 ALDH1B1P30837 517 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 CDC37Q16543 378 aaPredicted RBP12.79□□□□□ -0.36
CDH3-203ENST00000542274 AKNAD1Q5T1N1 836 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 MICAL1Q8TDZ2 1067 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 GNL3LQ9NVN8 582 aaKnown RBP12.79□□□□□ -0.36
CDH3-203ENST00000542274 CPP00450 1065 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 LEKR1Q6ZMV7 388 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 CDCA7Q9BWT1 371 aaPredicted RBP12.79□□□□□ -0.36
CDH3-203ENST00000542274 SRRTQ9BXP5 876 aaKnown RBP12.79□□□□□ -0.36
CDH3-203ENST00000542274 SYNPO2Q9UMS6 1093 aa12.79□□□□□ -0.36
CDH3-203ENST00000542274 NUCB2P80303 420 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 INF2Q27J81 1249 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 OGFOD1Q8N543 542 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 EDC3Q96F86 508 aaKnown RBP12.78□□□□□ -0.36
CDH3-203ENST00000542274 IRX2Q9BZI1 471 aaPredicted RBP12.78□□□□□ -0.36
CDH3-203ENST00000542274 UTYO14607 1347 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 IFIT2P09913 472 aaKnown RBP12.78□□□□□ -0.36
CDH3-203ENST00000542274 VPS72Q15906 364 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 BARGINQ6ZT62 677 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 CDC37L1Q7L3B6 337 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 ARMC2Q8NEN0 867 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 PLEKHG4BQ96PX9 1271 aa12.78□□□□□ -0.36
CDH3-203ENST00000542274 A0A087WZG4 1122 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 CHGBP05060 677 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 CPA1P15085 419 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 IFT88Q13099 833 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 GBP6Q6ZN66 633 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 TDRD7Q8NHU6 1098 aaKnown RBP12.77□□□□□ -0.36
CDH3-203ENST00000542274 BAG1Q99933 345 aaPredicted RBP12.77□□□□□ -0.36
CDH3-203ENST00000542274 CWC25Q9NXE8 425 aaPredicted RBP12.77□□□□□ -0.36
CDH3-203ENST00000542274 SPATA31A6Q5VVP1 1343 aa12.77□□□□□ -0.36
CDH3-203ENST00000542274 POLR3GO15318 223 aaPredicted RBP12.77□□□□□ -0.37
CDH3-203ENST00000542274 ST18O60284 1047 aa12.77□□□□□ -0.37
CDH3-203ENST00000542274 GCFC2P16383 781 aaKnown RBP12.77□□□□□ -0.37
CDH3-203ENST00000542274 G3BP1Q13283 466 aaKnown RBP eCLIP12.77□□□□□ -0.37
CDH3-203ENST00000542274 FBXO38Q6PIJ6 1188 aa12.77□□□□□ -0.37
CDH3-203ENST00000542274 PTF1AQ7RTS3 328 aa12.77□□□□□ -0.37
CDH3-203ENST00000542274 FNBP4Q8N3X1 1017 aaPredicted RBP12.77□□□□□ -0.37
CDH3-203ENST00000542274 PARD3BQ8TEW8 1205 aa12.77□□□□□ -0.37
CDH3-203ENST00000542274 IQCGQ9H095 443 aaKnown RBP12.77□□□□□ -0.37
CDH3-203ENST00000542274 BOLA2Q9H3K6 86 aa12.77□□□□□ -0.37
CDH3-203ENST00000542274 ZSCAN16Q9H4T2 348 aaPredicted RBP12.77□□□□□ -0.37
CDH3-203ENST00000542274 NUP188Q5SRE5 1749 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 AOX1Q06278 1338 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 SGSM2O43147 1006 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 NAT2P11245 290 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 RASEFQ8IZ41 740 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 CNTROBQ8N137 903 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 BICD1Q96G01 975 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 COL9A3Q14050 684 aaPredicted RBP12.76□□□□□ -0.37
CDH3-203ENST00000542274 CCDC125Q86Z20 511 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 PLBD2Q8NHP8 589 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 STAG1Q8WVM7 1258 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 C17orf50Q8WW18 174 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 ECHDC1Q9NTX5 307 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 RBM27Q9P2N5 1060 aaKnown RBP12.76□□□□□ -0.37
CDH3-203ENST00000542274 IQSEC3Q9UPP2 1182 aaPredicted RBP12.76□□□□□ -0.37
CDH3-203ENST00000542274 AFF2P51816 1311 aa12.76□□□□□ -0.37
CDH3-203ENST00000542274 FMNL1O95466 1100 aaPredicted RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 PYGBP11216 843 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 TPM4P67936 248 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 PTH1RQ03431 593 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 ICA1Q05084 483 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 MCM6Q14566 821 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 IQUBQ8NA54 791 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 TMX3Q96JJ7 454 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 CHMP3Q9Y3E7 222 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 TJP1Q07157 1748 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 GLRX3O76003 335 aaKnown RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 KCNQ4P56696 695 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 CPLX2Q6PUV4 134 aaKnown RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 LRRC31Q6UY01 552 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 TRIM42Q8IWZ5 723 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 RBM12BQ8IXT5 1001 aaKnown RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 ELOA2Q8IYF1 753 aaPredicted RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 FAM227BQ96M60 508 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 ZBTB1Q9Y2K1 713 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 SMTNL1A8MU46 457 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 TPP2P29144 1249 aaPredicted RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 PTPN12Q05209 780 aaKnown RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 N4BP2L2Q92802 583 aaPredicted RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 LSG1Q9H089 658 aaKnown RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 TMOD4Q9NZQ9 345 aa12.75□□□□□ -0.37
CDH3-203ENST00000542274 CIZ1Q9ULV3 898 aaPredicted RBP12.75□□□□□ -0.37
CDH3-203ENST00000542274 ZSCAN9O15535 394 aaPredicted RBP12.74□□□□□ -0.37
CDH3-203ENST00000542274 RFX5P48382 616 aaPredicted RBP12.74□□□□□ -0.37
CDH3-203ENST00000542274 CORO7P57737 925 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 C3orf20Q8ND61 904 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 ZDHHC9Q9Y397 364 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 STARD3NLO95772 234 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 CYP19A1P11511 503 aaPredicted RBP12.74□□□□□ -0.37
CDH3-203ENST00000542274 PECAM1P16284 738 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms