RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 GRIK5Q16478 980 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 STRIP1Q5VSL9 837 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 GIMAP6Q6P9H5 292 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 STOX1Q6ZVD7 989 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 NOL8Q76FK4 1167 aaKnown RBP8.76□□□□□ -1.01
VPS53-205ENST00000541903 USP17L1Q7RTZ2 530 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 RALYLQ86SE5 291 aaKnown RBP8.76□□□□□ -1.01
VPS53-205ENST00000541903 ZNF277Q9NRM2 450 aaPredicted RBP8.76□□□□□ -1.01
VPS53-205ENST00000541903 BCS1LQ9Y276 419 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 TAF6LQ9Y6J9 622 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 KIAA1551Q9HCM1 1747 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 GAKO14976 1311 aa8.76□□□□□ -1.01
VPS53-205ENST00000541903 F8W031 263 aaPredicted RBP8.75□□□□□ -1.01
VPS53-205ENST00000541903 CPA1P15085 419 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 IARSP41252 1262 aaKnown RBP8.75□□□□□ -1.01
VPS53-205ENST00000541903 BTDP43251 543 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 USP5P45974 858 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 FGD1P98174 961 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 DHX32Q7L7V1 743 aaKnown RBP8.75□□□□□ -1.01
VPS53-205ENST00000541903 TBC1D10CQ8IV04 446 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 AMOTL1Q8IY63 956 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 NIM1KQ8IY84 436 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 CERS5Q8N5B7 392 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 NCOA7Q8NI08 942 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 SDR42E1Q8WUS8 393 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 TTC14Q96N46 770 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 RNF41Q9H4P4 317 aaPredicted RBP8.75□□□□□ -1.01
VPS53-205ENST00000541903 ATP8A2Q9NTI2 1148 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 TTF2Q9UNY4 1162 aaKnown RBP8.75□□□□□ -1.01
VPS53-205ENST00000541903 LIMCH1Q9UPQ0 1083 aa8.75□□□□□ -1.01
VPS53-205ENST00000541903 GPR75-ASB3A0A0A6YYF3 556 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 SLC3A2P08195 630 aaKnown RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 PPP4CP60510 307 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 PPARAQ07869 468 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 DACT2Q5SW24 774 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 SPRYD3Q8NCJ5 442 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 NLGN2Q8NFZ4 835 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 TEKT1Q969V4 418 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 FAM163AQ96GL9 167 aaPredicted RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 TMX3Q96JJ7 454 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 ZSCAN31Q96LW9 406 aaPredicted RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 TCEANC2Q96MN5 208 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 MXD3Q9BW11 206 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 SLKQ9H2G2 1235 aaPredicted RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 CNNM2Q9H8M5 875 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 ARPP21Q9UBL0 812 aaPredicted RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 DAGLAQ9Y4D2 1042 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 MYO5AQ9Y4I1 1855 aaKnown RBP8.74□□□□□ -1.01
VPS53-205ENST00000541903 MYO3BQ8WXR4 1341 aa8.74□□□□□ -1.01
VPS53-205ENST00000541903 MINDY4BA8MYZ0 360 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 MCM5P33992 734 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 AKNAD1Q5T1N1 836 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 HHIPL2Q6UWX4 724 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 MFSD6Q6ZSS7 791 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 KIAA0825Q8IV33 1275 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 MB21D2Q8IYB1 491 aaPredicted RBP8.73□□□□□ -1.01
VPS53-205ENST00000541903 TEX11Q8IYF3 940 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 SH3RF3Q8TEJ3 882 aaPredicted RBP8.73□□□□□ -1.01
VPS53-205ENST00000541903 STAG1Q8WVM7 1258 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 JDP2Q8WYK2 163 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 KRT23Q9C075 422 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 NBPF3Q9H094 633 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 ALDH8A1Q9H2A2 487 aaPredicted RBP8.73□□□□□ -1.01
VPS53-205ENST00000541903 DCP1AQ9NPI6 582 aaPredicted RBP8.73□□□□□ -1.01
VPS53-205ENST00000541903 SH2B1Q9NRF2 756 aaPredicted RBP8.73□□□□□ -1.01
VPS53-205ENST00000541903 ZNRF3Q9ULT6 936 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 TIAM2Q8IVF5 1701 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 WDR19Q8NEZ3 1342 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 LTBP3Q9NS15 1303 aa8.73□□□□□ -1.01
VPS53-205ENST00000541903 YDJCA8MPS7 323 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 USP17L12C9JPN9 530 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 USP17L21D6R901 530 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 NFKBIEO00221 500 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 PRC1O43663 620 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 PCP11498 1178 aaKnown RBP8.72□□□□□ -1.01
VPS53-205ENST00000541903 CRKP46108 304 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 SCNN1DP51172 638 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 HDLBPQ00341 1268 aaKnown RBP8.72□□□□□ -1.01
VPS53-205ENST00000541903 CTDSPL2Q05D32 466 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 RSBN1LQ6PCB5 846 aaPredicted RBP8.72□□□□□ -1.01
VPS53-205ENST00000541903 Q6ZUG5 572 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 FHDC1Q9C0D6 1143 aaPredicted RBP8.72□□□□□ -1.01
VPS53-205ENST00000541903 KCNQ5Q9NR82 932 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 TOMM22Q9NS69 142 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 FOXD4L1Q9NU39 408 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 MCM9Q9NXL9 1143 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 ANAPC4Q9UJX5 808 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 NEDD4P46934 1319 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 CCDC88AQ3V6T2 1871 aa8.72□□□□□ -1.01
VPS53-205ENST00000541903 LAMA4Q16363 1823 aa8.71□□□□□ -1.01
VPS53-205ENST00000541903 B4E1Z4 1266 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 RAD17O75943 681 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 RBM5P52756 815 aaKnown RBP eCLIP8.71□□□□□ -1.02
VPS53-205ENST00000541903 RHBDL3P58872 404 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 EXOSC10Q01780 885 aaKnown RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 CUL4AQ13619 759 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 TOB2Q14106 344 aaPredicted RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 SBK1Q52WX2 424 aa8.71□□□□□ -1.02
VPS53-205ENST00000541903 RRP12Q5JTH9 1297 aaKnown RBP8.71□□□□□ -1.02
VPS53-205ENST00000541903 CTR9Q6PD62 1173 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms