RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 PHKA1P46020 1223 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 KIF23Q02241 960 aaPredicted RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 HSP90AA2PQ14568 343 aaPredicted RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 TPRNQ4KMQ1 711 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 INTS5Q6P9B9 1019 aaKnown RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 CPLX2Q6PUV4 134 aaKnown RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 IGDCC4Q8TDY8 1250 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 TIGD1Q96MW7 591 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 ZNF830Q96NB3 372 aaPredicted RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 DNAJC25Q9H1X3 360 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 CNNM2Q9H8M5 875 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 GPHNQ9NQX3 736 aaPredicted RBP11.53□□□□□ -0.56
LMO3-227ENST00000541764 CCDC87Q9NVE4 849 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 LAMB2P55268 1798 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 ZNF831Q5JPB2 1677 aa11.53□□□□□ -0.56
LMO3-227ENST00000541764 SPTLC2O15270 562 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 CMA1P23946 247 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 ME1P48163 572 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 RBM6P78332 1123 aaKnown RBP11.52□□□□□ -0.56
LMO3-227ENST00000541764 MAP3K12Q12852 859 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 APOA5Q6Q788 366 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 TBC1D10CQ8IV04 446 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 ELOA2Q8IYF1 753 aaPredicted RBP11.52□□□□□ -0.56
LMO3-227ENST00000541764 SPATA5Q8NB90 893 aa11.52□□□□□ -0.56
LMO3-227ENST00000541764 CCDC85AQ96PX6 553 aaPredicted RBP11.52□□□□□ -0.56
LMO3-227ENST00000541764 UTP14AQ9BVJ6 771 aaKnown RBP11.52□□□□□ -0.56
LMO3-227ENST00000541764 FTOQ9C0B1 505 aaKnown RBP eCLIP11.52□□□□□ -0.56
LMO3-227ENST00000541764 NAT10Q9H0A0 1025 aaKnown RBP11.52□□□□□ -0.56
LMO3-227ENST00000541764 GOLGA6L19H0YKK7 550 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 PPP6R2O75170 966 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 CAMTA2O94983 1202 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 METAP2P50579 478 aaKnown RBP eCLIP11.51□□□□□ -0.57
LMO3-227ENST00000541764 DHX8Q14562 1220 aaKnown RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 SLC39A14Q15043 492 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 STK38Q15208 465 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 NTRK3Q16288 839 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 CCDC152Q4G0S7 254 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 AXDND1Q5T1B0 1012 aaPredicted RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 ANO1Q5XXA6 986 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 CYB5R4Q7L1T6 521 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 AIDAQ96BJ3 306 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 TRIM5Q9C035 493 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 WWC3Q9ULE0 1092 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 NAP1L2Q9ULW6 460 aaPredicted RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 PYCARDQ9ULZ3 195 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 MORC2Q9Y6X9 1032 aaPredicted RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 DOT1LQ8TEK3 1739 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 NEDD4P46934 1319 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 NRAPQ86VF7 1730 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 IDH1O75874 414 aaKnown RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 U2AF2P26368 475 aaKnown RBP eCLIP11.51□□□□□ -0.57
LMO3-227ENST00000541764 PLCB2Q00722 1185 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 CEBPZQ03701 1054 aaKnown RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 SUSD4Q5VX71 490 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 SYNE3Q6ZMZ3 975 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 C11orf57Q6ZUT1 292 aaPredicted RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 DHX40Q8IX18 779 aaKnown RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 CEP57L1Q8IYX8 460 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 IFNL3Q8IZI9 196 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 STAG1Q8WVM7 1258 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 KRT23Q9C075 422 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 LY9Q9HBG7 655 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.51□□□□□ -0.57
LMO3-227ENST00000541764 KCND1Q9NSA2 647 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 KIAA1468Q9P260 1216 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 CLIC4Q9Y696 253 aa11.51□□□□□ -0.57
LMO3-227ENST00000541764 SPATA31A1Q5TZJ5 1347 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 BCL9LQ86UU0 1499 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 ZBTB43O43298 467 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 NTSR2O95665 410 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 PTGS1P23219 599 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 GUCY1B3Q02153 619 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 RASGRF1Q13972 1273 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 TMED8Q6PL24 325 aaPredicted RBP11.5□□□□□ -0.57
LMO3-227ENST00000541764 CLEC4GQ6UXB4 293 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 CCDC186Q7Z3E2 898 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 TMTC2Q8N394 836 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 JMYQ8N9B5 988 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 WASF1Q92558 559 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 CDC5LQ99459 802 aaKnown RBP11.5□□□□□ -0.57
LMO3-227ENST00000541764 EPB41L4AQ9HCS5 686 aaPredicted RBP11.5□□□□□ -0.57
LMO3-227ENST00000541764 FAM217BQ9NTX9 383 aaPredicted RBP11.5□□□□□ -0.57
LMO3-227ENST00000541764 HPSEQ9Y251 543 aa11.5□□□□□ -0.57
LMO3-227ENST00000541764 ROBO1Q9Y6N7 1651 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 GSG1L2A8MUP6 293 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 KIF28PB7ZC32 967 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 IFNAR1P17181 557 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 CRKLP46109 303 aaKnown RBP11.49□□□□□ -0.57
LMO3-227ENST00000541764 NDUFA8P51970 172 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 PPP2R5BQ15173 497 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 SF3A1Q15459 793 aaKnown RBP11.49□□□□□ -0.57
LMO3-227ENST00000541764 AKNAD1Q5T1N1 836 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 BARGINQ6ZT62 677 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 SPC24Q8NBT2 197 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 SMARCC1Q92922 1105 aaPredicted RBP11.49□□□□□ -0.57
LMO3-227ENST00000541764 MPHOSPH8Q99549 860 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 ALG1Q9BT22 464 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 CLIP2Q9UDT6 1046 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 ANAPC4Q9UJX5 808 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 PHLPP1O60346 1717 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms