RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TRIM6-TRIM34B2RNG4 842 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 PPP4CP60510 307 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 FSD1Q9BTV5 496 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 ANTXR1Q9H6X2 564 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 PPP2R3BQ9Y5P8 575 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 MAST2Q6P0Q8 1798 aa21.15■□□□□ 0.98
CLSTN3-210ENST00000540931 DOCK2Q92608 1830 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 FOXN1O15353 648 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 CYP7A1P22680 504 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 TTC22Q5TAA0 569 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 CDC37L1Q7L3B6 337 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 MAGEB6Q8N7X4 407 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 DAGLAQ9Y4D2 1042 aa21.14■□□□□ 0.97
CLSTN3-210ENST00000540931 NPM3O75607 178 aaKnown RBP21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 ITGBL1O95965 494 aaPredicted RBP21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 PDE6AP16499 860 aa21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 PDE4AP27815 886 aa21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 ADD2P35612 726 aa21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 TSHZ3Q63HK5 1081 aa21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 SULF1Q8IWU6 871 aa21.13■□□□□ 0.97
CLSTN3-210ENST00000540931 RNF113AO15541 343 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 DIXDC1Q155Q3 683 aa21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 GRIK5Q16478 980 aa21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 SPDYE2Q495Y8 402 aa21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 APOBEC3HQ6NTF7 200 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 TRPM4Q8TD43 1214 aa21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 HOOK2Q96ED9 719 aa21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 PRMT6Q96LA8 375 aaPredicted RBP21.12■□□□□ 0.97
CLSTN3-210ENST00000540931 BTDP43251 543 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 MFAP1P55081 439 aaKnown RBP21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 FAM83AQ86UY5 434 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 RILPL2Q969X0 211 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 PRDM10Q9NQV6 1147 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 NDUFB9Q9Y6M9 179 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 MYH2Q9UKX2 1941 aa21.11■□□□□ 0.97
CLSTN3-210ENST00000540931 ZNF532Q9HCE3 1301 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 VEGFBP49765 207 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 HIRAP54198 1017 aaPredicted RBP21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 NBPF9Q3BBW0 867 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 BMP2KLQ5H9B9 411 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 APPBP2Q92624 585 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 USP40Q9NVE5 1235 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 GGA3Q9NZ52 723 aa21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 ZNF70Q9UC06 446 aaPredicted RBP21.1■□□□□ 0.97
CLSTN3-210ENST00000540931 ECM29Q5VYK3 1845 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 MAGEB6P1A0A0J9YX57 407 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 SHTN1A0MZ66 631 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 TMEM88BA6NKF7 163 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 GNAT2P19087 354 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 ANGEL2Q5VTE6 544 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 AIDAQ96BJ3 306 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 DDRGK1Q96HY6 314 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 IDI2Q9BXS1 227 aa21.09■□□□□ 0.97
CLSTN3-210ENST00000540931 ENTPD3O75355 529 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 CDC42EP5Q6NZY7 148 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 CASC1Q6TDU7 716 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 KRT26Q7Z3Y9 468 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 RUFY2Q8WXA3 655 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 EDC3Q96F86 508 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 CRNKL1Q9BZJ0 848 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 TDRD3Q9H7E2 651 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 HELLSQ9NRZ9 838 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 TAOK2Q9UL54 1235 aa21.08■□□□□ 0.97
CLSTN3-210ENST00000540931 ADAMTSL1Q8N6G6 1762 aa21.08■□□□□ 0.96
CLSTN3-210ENST00000540931 TCRBV5S4A2TA0A5A2 114 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 EGFRP00533 1210 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 NF2P35240 595 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 VEZTQ9HBM0 779 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 DIAPH3Q9NSV4 1193 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 MYH7P12883 1935 aa21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 RPAP1Q9BWH6 1393 aaPredicted RBP21.07■□□□□ 0.96
CLSTN3-210ENST00000540931 EIF5BO60841 1220 aaKnown RBP21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 CTCFP49711 727 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 RGS3P49796 1198 aa21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 SUPT20HL1Q3ZLR7 823 aa21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 ZNF384Q8TF68 577 aa21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 WBP1LQ9NX94 342 aa21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 AATFQ9NY61 560 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLSTN3-210ENST00000540931 TEX11Q8IYF3 940 aa21.05■□□□□ 0.96
CLSTN3-210ENST00000540931 FAM151AQ8WW52 585 aa21.05■□□□□ 0.96
CLSTN3-210ENST00000540931 DHX36Q9H2U1 1008 aaKnown RBP21.05■□□□□ 0.96
CLSTN3-210ENST00000540931 SDSP20132 328 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 RHBDL3P58872 404 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 ZMYM1Q5SVZ6 1142 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 AMOTL1Q8IY63 956 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 DEFB129Q9H1M3 183 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 ATP8A2Q9NTI2 1148 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 GTF3C3Q9Y5Q9 886 aa21.04■□□□□ 0.96
CLSTN3-210ENST00000540931 CLRN2A0PK11 232 aa21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 GSPT1P15170 499 aaKnown RBP21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 MCMDC2Q4G0Z9 681 aa21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 GIMAP6Q6P9H5 292 aa21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 RIOK1Q9BRS2 568 aaKnown RBP21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 RAD50Q92878 1312 aa21.03■□□□□ 0.96
CLSTN3-210ENST00000540931 AK9Q5TCS8 1911 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 COL2A1P02458 1487 aaPredicted RBP21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 RASSF10A6NK89 507 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 USP5P45974 858 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 FKBP1BP68106 108 aa21.02■□□□□ 0.96
CLSTN3-210ENST00000540931 MAP1SQ66K74 1059 aaPredicted RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms