RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ERBB3P21860 1342 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 SGSM2O43147 1006 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 GYG1P46976 350 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 UBASH3AP57075 661 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 TAF3Q5VWG9 929 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 BRINP3Q76B58 766 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 INTS4Q96HW7 963 aaKnown RBP16.01■□□□□ 0.15
USP3-204ENST00000540797 PRDM15P57071 1507 aaPredicted RBP16.01■□□□□ 0.15
USP3-204ENST00000540797 ZNF174Q15697 407 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 HSP90AA4PQ58FG1 418 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 HS2ST1Q7LGA3 356 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 KIF24Q5T7B8 1368 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 AKR1B10O60218 316 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 ZSCAN23Q3MJ62 389 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 BEND3Q5T5X7 828 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 PLIN2Q99541 437 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 SYNCQ9H7C4 482 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 ZBTB1Q9Y2K1 713 aa16.01■□□□□ 0.15
USP3-204ENST00000540797 BLMP54132 1417 aaPredicted RBP16■□□□□ 0.15
USP3-204ENST00000540797 ANKARQ7Z5J8 1434 aa16■□□□□ 0.15
USP3-204ENST00000540797 ABCC3O15438 1527 aa16■□□□□ 0.15
USP3-204ENST00000540797 H0YHG0 523 aa16■□□□□ 0.15
USP3-204ENST00000540797 DPY19L2Q6NUT2 758 aa16■□□□□ 0.15
USP3-204ENST00000540797 ZBED4O75132 1171 aa16■□□□□ 0.15
USP3-204ENST00000540797 TNFAIP1Q13829 316 aa16■□□□□ 0.15
USP3-204ENST00000540797 DOK7Q18PE1 504 aa16■□□□□ 0.15
USP3-204ENST00000540797 UVSSAQ2YD98 709 aa16■□□□□ 0.15
USP3-204ENST00000540797 ANO6Q4KMQ2 910 aa16■□□□□ 0.15
USP3-204ENST00000540797 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16■□□□□ 0.15
USP3-204ENST00000540797 GSTTP1A0A1W2PQM5 241 aa16■□□□□ 0.15
USP3-204ENST00000540797 FAM212AQ96EL1 285 aa16■□□□□ 0.15
USP3-204ENST00000540797 GLT8D2Q9H1C3 349 aa16■□□□□ 0.15
USP3-204ENST00000540797 IQUBQ8NA54 791 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 TMX1Q9H3N1 280 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 GOPCQ9HD26 462 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 SNX14Q9Y5W7 946 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 GBP3Q9H0R5 595 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 TSPYL1Q9H0U9 437 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 ABCC4O15439 1325 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 CHRNDQ07001 517 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 LEKR1Q6ZMV7 388 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 CPXCR1Q8N123 301 aa15.99■□□□□ 0.15
USP3-204ENST00000540797 VWA3AA6NCI4 1184 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 PRPF4BQ13523 1007 aaKnown RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 SEPT12Q8IYM1 358 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 SSH3Q8TE77 659 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 GTPBP4Q9BZE4 634 aaKnown RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 CWC15Q9P013 229 aaKnown RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 BCAMP50895 628 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 TFAP4Q01664 338 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 MAP3K9P80192 1104 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 GIGYF2Q6Y7W6 1299 aaKnown RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 CCDC102AQ96A19 550 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 KDM6BO15054 1643 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 BRDTQ58F21 947 aaPredicted RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 RILPL1Q5EBL4 403 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 PLEKHF1Q96S99 279 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 ARPP21Q9UBL0 812 aaPredicted RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 UQCRHLA0A096LP55 91 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 UQCRHP07919 91 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 RBM10P98175 930 aaKnown RBP15.98■□□□□ 0.15
USP3-204ENST00000540797 LRSAM1Q6UWE0 723 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 PIK3AP1Q6ZUJ8 805 aa15.98■□□□□ 0.15
USP3-204ENST00000540797 HOOK3Q86VS8 718 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.97■□□□□ 0.152e-6■■■□□ 18.4
USP3-204ENST00000540797 BICDL2A1A5D9 508 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 KIAA0825Q8IV33 1275 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 GREM2Q9H772 168 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 NCOA5Q9HCD5 579 aaKnown RBP15.97■□□□□ 0.15
USP3-204ENST00000540797 MAP3K4Q9Y6R4 1608 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 KIF1BO60333 1816 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 CHMP2AO43633 222 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 MYCLP12524 364 aaPredicted RBP15.97■□□□□ 0.15
USP3-204ENST00000540797 PROSER3Q2NL68 480 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 LRRC24Q50LG9 513 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 CRACR2AQ9BSW2 395 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 MRVI1Q9Y6F6 885 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 SERPINB2P05120 415 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 KCNQ4P56696 695 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 AOPEPQ8N6M6 819 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 BEGAINQ9BUH8 593 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 THRAP3Q9Y2W1 955 aaKnown RBP15.97■□□□□ 0.15
USP3-204ENST00000540797 SHROOM2Q13796 1616 aa15.97■□□□□ 0.15
USP3-204ENST00000540797 IRX3P78415 501 aaPredicted RBP15.96■□□□□ 0.15
USP3-204ENST00000540797 CSADQ9Y600 493 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 SYT1P21579 422 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 CCT6AP40227 531 aaKnown RBP15.96■□□□□ 0.15
USP3-204ENST00000540797 EDC3Q96F86 508 aaKnown RBP15.96■□□□□ 0.15
USP3-204ENST00000540797 LZTS2Q9BRK4 669 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 MYL10Q9BUA6 226 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 GOLGA6L9A6NEM1 432 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 SCNN1DP51172 638 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 PPARAQ07869 468 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 IFI16Q16666 785 aaKnown RBP15.96■□□□□ 0.15
USP3-204ENST00000540797 ATL3Q6DD88 541 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 NSMFQ6X4W1 530 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 SV2BQ7L1I2 683 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 DNAJC25Q9H1X3 360 aa15.96■□□□□ 0.15
USP3-204ENST00000540797 FAM47AQ5JRC9 791 aa15.96■□□□□ 0.14
USP3-204ENST00000540797 LLPHQ9BRT6 129 aaKnown RBP15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms