RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MYSM1Q5VVJ2 828 aa19.69■□□□□ 0.74
USP28-208ENST00000540438 CYP7A1P22680 504 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 LRRFIP1Q32MZ4 808 aaKnown RBP19.68■□□□□ 0.74
USP28-208ENST00000540438 KRT40Q6A162 431 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 LINC00301Q8NCQ3 95 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 C8orf37Q96NL8 207 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 NUP188Q5SRE5 1749 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 SPTLC2O15270 562 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 IGHMBP2P38935 993 aaKnown RBP19.68■□□□□ 0.74
USP28-208ENST00000540438 ZNF75DP51815 510 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 PDILTQ8N807 584 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 TCRBV5S4A2TA0A5A2 114 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 NPHP1O15259 732 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 ZBTB43O43298 467 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 GRIN1Q05586 938 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 VPS37DQ86XT2 251 aa19.68■□□□□ 0.74
USP28-208ENST00000540438 CACTINQ8WUQ7 758 aaKnown RBP19.68■□□□□ 0.74
USP28-208ENST00000540438 GPR101Q96P66 508 aaPredicted RBP19.68■□□□□ 0.74
USP28-208ENST00000540438 PARP4Q9UKK3 1724 aaKnown RBP19.67■□□□□ 0.74
USP28-208ENST00000540438 GSG1L2A8MUP6 293 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 CAMTA2O94983 1202 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 MAP3K12Q12852 859 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 KIF3AQ9Y496 699 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 SLIT2O94813 1529 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 FOXN1O15353 648 aa19.67■□□□□ 0.74
USP28-208ENST00000540438 KIF23Q02241 960 aaPredicted RBP19.67■□□□□ 0.74
USP28-208ENST00000540438 MRPS27Q92552 414 aaKnown RBP19.67■□□□□ 0.74
USP28-208ENST00000540438 CELF1Q92879 486 aaKnown RBP19.67■□□□□ 0.74
USP28-208ENST00000540438 RFX7Q2KHR2 1363 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 MROH7-TTC4A0A0A0MT08 1334 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 BTBD18B2RXH4 712 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 FAM160A1Q05DH4 1040 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 GOLGA8FQ08AF8 430 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 GOLGA8DPQ0D2H9 430 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 NR5A1Q13285 461 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 LAMB4A4D0S4 1761 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 CDHR2Q9BYE9 1310 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 SH2B2O14492 632 aaPredicted RBP19.66■□□□□ 0.74
USP28-208ENST00000540438 NAA30Q147X3 362 aaPredicted RBP19.66■□□□□ 0.74
USP28-208ENST00000540438 AMIGO3Q86WK7 504 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 SLC12A7Q9Y666 1083 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 STRCQ7RTU9 1775 aa19.66■□□□□ 0.74
USP28-208ENST00000540438 FAM205CA6NFA0 338 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 IARSP41252 1262 aaKnown RBP19.65■□□□□ 0.74
USP28-208ENST00000540438 ENGASEQ8NFI3 743 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 SHANK3Q9BYB0 1731 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 CCDC69A6NI79 296 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 TAF1P21675 1872 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 USP27XA6NNY8 438 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 NMT2O60551 498 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 FGFR2P21802 821 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 LMOD1P29536 600 aaPredicted RBP19.65■□□□□ 0.74
USP28-208ENST00000540438 ZRSR1Q15695 479 aaKnown RBP19.65■□□□□ 0.74
USP28-208ENST00000540438 MFSD6Q6ZSS7 791 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 GRAMD1CQ8IYS0 662 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 IGDCC4Q8TDY8 1250 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 LY9Q9HBG7 655 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 FAM217BQ9NTX9 383 aaPredicted RBP19.65■□□□□ 0.74
USP28-208ENST00000540438 NWD2Q9ULI1 1742 aa19.65■□□□□ 0.74
USP28-208ENST00000540438 IQCB1Q15051 598 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 ANO1Q5XXA6 986 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 KIAA1524Q8TCG1 905 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.64■□□□□ 0.73
USP28-208ENST00000540438 ZNF202O95125 648 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 PFKFB1P16118 471 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 PNOCQ13519 176 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 TTF1Q15361 905 aaPredicted RBP19.64■□□□□ 0.73
USP28-208ENST00000540438 ZSCAN25Q6NSZ9 544 aa19.64■□□□□ 0.73
USP28-208ENST00000540438 FMR1NBQ8N0W7 255 aaPredicted RBP19.64■□□□□ 0.73
USP28-208ENST00000540438 SMC2O95347 1197 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 CCDC152Q4G0S7 254 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 OXER1Q8TDS5 423 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 DHX16O60231 1041 aaKnown RBP19.63■□□□□ 0.73
USP28-208ENST00000540438 TPM2P07951 284 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 UBE3CQ15386 1083 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 LINC00116Q8NCU8 138 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 COL4A1P02462 1669 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 UBR2Q8IWV8 1755 aa19.63■□□□□ 0.73
USP28-208ENST00000540438 PATL2C9JE40 543 aaKnown RBP19.62■□□□□ 0.73
USP28-208ENST00000540438 COBLO75128 1261 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 ZNF827Q17R98 1081 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 NOM1Q5C9Z4 860 aaKnown RBP19.62■□□□□ 0.73
USP28-208ENST00000540438 DHX40Q8IX18 779 aaKnown RBP19.62■□□□□ 0.73
USP28-208ENST00000540438 NTSR2O95665 410 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 ARID4AP29374 1257 aaPredicted RBP19.62■□□□□ 0.73
USP28-208ENST00000540438 ATP1A3P13637 1013 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 STX1AQ16623 288 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 TBC1D9BQ66K14 1250 aa19.62■□□□□ 0.73
USP28-208ENST00000540438 UQCRFS1P1P0C7P4 283 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 FAM47AQ5JRC9 791 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 RTEL1Q9NZ71 1219 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.61■□□□□ 0.73
USP28-208ENST00000540438 V9GYY5 206 aaPredicted RBP19.61■□□□□ 0.73
USP28-208ENST00000540438 CASP1P29466 404 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 TXNRD3Q86VQ6 643 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 SPATA31A1Q5TZJ5 1347 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 MROH5Q6ZUA9 1318 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 ITGB4P16144 1822 aa19.61■□□□□ 0.73
USP28-208ENST00000540438 AKNAD1Q5T1N1 836 aa19.6■□□□□ 0.73
USP28-208ENST00000540438 ADALQ6DHV7 355 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms