RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 NWD2Q9ULI1 1742 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 ROBO1Q9Y6N7 1651 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 FOXN1O15353 648 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 TRIM65Q6PJ69 517 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 RALYLQ86SE5 291 aaKnown RBP23.43■■□□□ 1.34
TMEM260-203ENST00000539559 CARD6Q9BX69 1037 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 FANCLQ9NW38 375 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 PODXL2Q9NZ53 605 aa23.43■■□□□ 1.34
TMEM260-203ENST00000539559 PNMA6AP0CW24 399 aaPredicted RBP23.42■■□□□ 1.34
TMEM260-203ENST00000539559 BRAPQ7Z569 592 aa23.42■■□□□ 1.34
TMEM260-203ENST00000539559 XAGE2Q96GT9 111 aa23.42■■□□□ 1.34
TMEM260-203ENST00000539559 BMS1Q14692 1282 aaKnown RBP23.42■■□□□ 1.34
TMEM260-203ENST00000539559 VPS37DQ86XT2 251 aa23.42■■□□□ 1.34
TMEM260-203ENST00000539559 ALG1Q9BT22 464 aa23.42■■□□□ 1.34
TMEM260-203ENST00000539559 CEP126Q9P2H0 1117 aa23.42■■□□□ 1.34
TMEM260-203ENST00000539559 NRDCO43847 1150 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 PLA2G4AP47712 749 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 SLC39A14Q15043 492 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 FOXP4Q8IVH2 680 aaPredicted RBP23.41■■□□□ 1.34
TMEM260-203ENST00000539559 NCOA7Q8NI08 942 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 UBXN4Q92575 508 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 ZBTB9Q96C00 473 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 MYL10Q9BUA6 226 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 DHX16O60231 1041 aaKnown RBP23.41■■□□□ 1.34
TMEM260-203ENST00000539559 CDC27P30260 824 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 NOL10Q9BSC4 688 aaKnown RBP23.41■■□□□ 1.34
TMEM260-203ENST00000539559 INCENPQ9NQS7 918 aa23.41■■□□□ 1.34
TMEM260-203ENST00000539559 POLR3GO15318 223 aaPredicted RBP23.4■■□□□ 1.34
TMEM260-203ENST00000539559 PDE4BQ07343 736 aa23.4■■□□□ 1.34
TMEM260-203ENST00000539559 GPR108Q9NPR9 543 aa23.4■■□□□ 1.34
TMEM260-203ENST00000539559 AHDC1Q5TGY3 1603 aaPredicted RBP23.4■■□□□ 1.34
TMEM260-203ENST00000539559 ZNF213O14771 459 aa23.4■■□□□ 1.34
TMEM260-203ENST00000539559 GNL2Q13823 731 aaKnown RBP23.4■■□□□ 1.34
TMEM260-203ENST00000539559 REXO1L1PQ8IX06 675 aa23.4■■□□□ 1.34
TMEM260-203ENST00000539559 MNS1Q8NEH6 495 aa23.4■■□□□ 1.34
TMEM260-203ENST00000539559 GPAA1O43292 621 aa23.39■■□□□ 1.34
TMEM260-203ENST00000539559 LONRF3Q496Y0 759 aa23.39■■□□□ 1.34
TMEM260-203ENST00000539559 CYB5R4Q7L1T6 521 aa23.39■■□□□ 1.34
TMEM260-203ENST00000539559 MICU3Q86XE3 530 aa23.39■■□□□ 1.34
TMEM260-203ENST00000539559 NBPF3Q9H094 633 aa23.39■■□□□ 1.34
TMEM260-203ENST00000539559 MYL5Q02045 173 aa23.39■■□□□ 1.33
TMEM260-203ENST00000539559 CCDC158Q5M9N0 1113 aa23.39■■□□□ 1.33
TMEM260-203ENST00000539559 KRT40Q6A162 431 aa23.39■■□□□ 1.33
TMEM260-203ENST00000539559 METTL16Q86W50 562 aaKnown RBP23.39■■□□□ 1.33
TMEM260-203ENST00000539559 INTS13Q9NVM9 706 aa23.39■■□□□ 1.33
TMEM260-203ENST00000539559 IKBKBO14920 756 aa23.38■■□□□ 1.33
TMEM260-203ENST00000539559 PDILTQ8N807 584 aa23.38■■□□□ 1.33
TMEM260-203ENST00000539559 TRERF1Q96PN7 1200 aa23.38■■□□□ 1.33
TMEM260-203ENST00000539559 TOP1P11387 765 aaKnown RBP23.38■■□□□ 1.33
TMEM260-203ENST00000539559 BMP6P22004 513 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 TUBE1Q9UJT0 475 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 TBC1D10CQ8IV04 446 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 FBXL16Q8N461 479 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 WDR24Q96S15 920 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 PCDHA5Q9Y5H7 936 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 PARP3Q9Y6F1 533 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 SHANK3Q9BYB0 1731 aa23.37■■□□□ 1.33
TMEM260-203ENST00000539559 COL14A1Q05707 1796 aaKnown RBP23.37■■□□□ 1.33
TMEM260-203ENST00000539559 APPP05067 770 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 METAP2P50579 478 aaKnown RBP eCLIP23.36■■□□□ 1.33
TMEM260-203ENST00000539559 PTPAQ15257 358 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 ZNF827Q17R98 1081 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 HPSEQ9Y251 543 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 LTBP4Q8N2S1 1624 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 VWA3AA6NCI4 1184 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 ADKP55263 362 aaKnown RBP23.36■■□□□ 1.33
TMEM260-203ENST00000539559 VSTM4Q8IW00 320 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 GLI3P10071 1580 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 KCNJ6P48051 423 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 CCDC57Q2TAC2 916 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 TMCO3Q6UWJ1 677 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 TRMT44Q8IYL2 757 aaKnown RBP23.36■■□□□ 1.33
TMEM260-203ENST00000539559 SYNE4Q8N205 404 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 APPBP2Q92624 585 aa23.36■■□□□ 1.33
TMEM260-203ENST00000539559 ZCCHC17Q9NP64 241 aaKnown RBP23.36■■□□□ 1.33
TMEM260-203ENST00000539559 B4E1Z4 1266 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 TADA3O75528 432 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 GRIN1Q05586 938 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 CHMP4CQ96CF2 233 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 TMOD3Q9NYL9 352 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 PHLPP2Q6ZVD8 1323 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 LAMB4A4D0S4 1761 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 TMEM139Q8IV31 216 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 CNNM3Q8NE01 707 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 PPP2R2CQ9Y2T4 447 aa23.35■■□□□ 1.33
TMEM260-203ENST00000539559 ZRANB2O95218 330 aaKnown RBP eCLIP23.34■■□□□ 1.33
TMEM260-203ENST00000539559 TOGARAM2Q6ZUX3 1019 aa23.34■■□□□ 1.33
TMEM260-203ENST00000539559 FAM89AQ96GI7 184 aa23.34■■□□□ 1.33
TMEM260-203ENST00000539559 MAP3K14Q99558 947 aa23.34■■□□□ 1.33
TMEM260-203ENST00000539559 DESI2Q9BSY9 194 aa23.34■■□□□ 1.33
TMEM260-203ENST00000539559 COL22A1Q8NFW1 1626 aaPredicted RBP23.34■■□□□ 1.33
TMEM260-203ENST00000539559 GRAMD1CQ8IYS0 662 aa23.34■■□□□ 1.33
TMEM260-203ENST00000539559 GNG11P61952 73 aa23.33■■□□□ 1.33
TMEM260-203ENST00000539559 OLFM4Q6UX06 510 aa23.33■■□□□ 1.33
TMEM260-203ENST00000539559 KCPQ6ZWJ8 1503 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 SASH3O75995 380 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 TAF7LQ5H9L4 462 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 CCDC34Q96HJ3 373 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 KCNH3Q9ULD8 1083 aa23.33■■□□□ 1.32
TMEM260-203ENST00000539559 ANGEL1Q9UNK9 670 aaKnown RBP23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms