RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 HOOK1Q9UJC3 728 aaKnown RBP12.93□□□□□ -0.34
SYNE1-237ENST00000539504 GPAA1O43292 621 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ZAP70P43403 619 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ANTXR2P58335 489 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 FAM193AP78312 1265 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 SMC1AQ14683 1233 aaKnown RBP12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-237ENST00000539504 VWA3AA6NCI4 1184 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ZRANB2O95218 330 aaKnown RBP eCLIP12.92□□□□□ -0.34
SYNE1-237ENST00000539504 IARSP41252 1262 aaKnown RBP12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ZNF827Q17R98 1081 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 CPLX3Q8WVH0 158 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 XAGE2Q96GT9 111 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 MYL10Q9BUA6 226 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 TUBE1Q9UJT0 475 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 FOXN1O15353 648 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 ZFYP08048 801 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-237ENST00000539504 KRT28Q7Z3Y7 464 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 HSD3B7Q9H2F3 369 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 GPR108Q9NPR9 543 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 TOMM22Q9NS69 142 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 DENND2AQ9ULE3 1009 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 NFE2L3Q9Y4A8 694 aa12.92□□□□□ -0.34
SYNE1-237ENST00000539504 H7C1W4 665 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 CASP7P55210 303 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 TOGARAM2Q6ZUX3 1019 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 CCDC82Q8N4S0 544 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 LTN1O94822 1766 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 GOLGA6L9A6NEM1 432 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 GTF2E1P29083 439 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-237ENST00000539504 GYS2P54840 703 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 ST5P78524 1137 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 KRBA2Q6ZNG9 492 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 TXLNBQ8N3L3 684 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 APPBP2Q92624 585 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 ANGEL1Q9UNK9 670 aaKnown RBP12.91□□□□□ -0.34
SYNE1-237ENST00000539504 GOLGA8AA7E2F4 631 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 FANCGO15287 622 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 PDE4BQ07343 736 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 CC2D1AQ6P1N0 951 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-237ENST00000539504 METTL16Q86W50 562 aaKnown RBP12.91□□□□□ -0.34
SYNE1-237ENST00000539504 GPR161Q8N6U8 529 aaKnown RBP12.91□□□□□ -0.34
SYNE1-237ENST00000539504 SLC26A6Q9BXS9 759 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 LZTFL1Q9NQ48 299 aa12.91□□□□□ -0.34
SYNE1-237ENST00000539504 NFAT5O94916 1531 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 B4E1Z4 1266 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 IDH1O75874 414 aaKnown RBP12.9□□□□□ -0.34
SYNE1-237ENST00000539504 A1BGP04217 495 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 SCARF1Q14162 830 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 SMARCE1Q969G3 411 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 MRC1P22897 1456 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 OVOS2A0A0G2JMS6 1433 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 LMAN1P49257 510 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 SAFBQ15424 915 aaKnown RBP eCLIP12.9□□□□□ -0.34
SYNE1-237ENST00000539504 KLHL10Q6JEL2 608 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 LRP10Q7Z4F1 713 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 GOLGA1Q92805 767 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 DHX58Q96C10 678 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 DCAF5Q96JK2 942 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 PARD6BQ9BYG5 372 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 C19orf44Q9H6X5 657 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 PUF60Q9UHX1 559 aaKnown RBP12.9□□□□□ -0.34
SYNE1-237ENST00000539504 AKAP2Q9Y2D5 859 aa12.9□□□□□ -0.34
SYNE1-237ENST00000539504 ZBTB43O43298 467 aa12.9□□□□□ -0.35
SYNE1-237ENST00000539504 PPP6R2O75170 966 aa12.9□□□□□ -0.35
SYNE1-237ENST00000539504 SASH3O75995 380 aa12.9□□□□□ -0.35
SYNE1-237ENST00000539504 FCHSD1Q86WN1 690 aa12.9□□□□□ -0.35
SYNE1-237ENST00000539504 CUTAO60888 179 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 TBC1D8O95759 1140 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 CHRNA2Q15822 529 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 SPECC1LQ69YQ0 1117 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 FOXP4Q8IVH2 680 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 KRI1Q8N9T8 703 aaKnown RBP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 AK7Q96M32 723 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 CDC27P30260 824 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 MCM6Q14566 821 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 ANKLE2Q86XL3 938 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 ZFP91Q96JP5 570 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 ZMYM6O95789 1325 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 POLR2DO15514 142 aaKnown RBP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 SLC9C2Q5TAH2 1124 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 RESP18Q5W5W9 173 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 GRAMD1CQ8IYS0 662 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 IRX2Q9BZI1 471 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-237ENST00000539504 HPSEQ9Y251 543 aa12.89□□□□□ -0.35
SYNE1-237ENST00000539504 RGPD2P0DJD1 1756 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 STX10O60499 249 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 TNNT3P45378 269 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-237ENST00000539504 TMEM67Q5HYA8 995 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 RRP12Q5JTH9 1297 aaKnown RBP12.88□□□□□ -0.35
SYNE1-237ENST00000539504 PPFIBP1Q86W92 1011 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 DACH1Q9UI36 760 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 KDM6AO15550 1401 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-237ENST00000539504 NBPF26B4DH59 902 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 UBE2Q2LH0YL09 131 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 MAP3K9P80192 1104 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 NBPF14Q5TI25 921 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 NBPF10Q6P3W6 841 aaKnown RBP12.88□□□□□ -0.35
SYNE1-237ENST00000539504 APOA5Q6Q788 366 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms