RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 PTPN22Q9Y2R2 807 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 DAGLAQ9Y4D2 1042 aa10.54□□□□□ -0.72
USP28-203ENST00000537490 CCER2I3L3R5 266 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 ADORA1P30542 326 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 INPP5BP32019 993 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 TCP10Q12799 353 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 NFIAQ12857 509 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 TAF1CQ15572 869 aaPredicted RBP10.53□□□□□ -0.72
USP28-203ENST00000537490 ERO1BQ86YB8 467 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 FAM151AQ8WW52 585 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 EFCC1Q9HA90 598 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 ZFYVE28Q9HCC9 887 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 GNL3LQ9NVN8 582 aaKnown RBP10.53□□□□□ -0.72
USP28-203ENST00000537490 ARAP2Q8WZ64 1704 aa10.53□□□□□ -0.72
USP28-203ENST00000537490 POTEFA5A3E0 1075 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 IRF6O14896 467 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 LDHBP07195 334 aaKnown RBP10.52□□□□□ -0.73
USP28-203ENST00000537490 TIMM10P62072 90 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 DCAF15Q66K64 600 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 CCDC102BQ68D86 513 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 INTS3Q68E01 1043 aaKnown RBP10.52□□□□□ -0.73
USP28-203ENST00000537490 ZFPM1Q8IX07 1006 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 ARHGAP45Q92619 1136 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 HOOK2Q96ED9 719 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 ZNF341Q9BYN7 854 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 USP40Q9NVE5 1235 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 FAM198AQ9UFP1 575 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 DENND2AQ9ULE3 1009 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 HDAC5Q9UQL6 1122 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 TNNQ9UQP3 1299 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 SALL1Q9NSC2 1324 aa10.52□□□□□ -0.73
USP28-203ENST00000537490 RPAP1Q9BWH6 1393 aaPredicted RBP10.52□□□□□ -0.73
USP28-203ENST00000537490 BTBD19C9JJ37 291 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 SEMA3EO15041 775 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 CETPP11597 493 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 PPIL2Q13356 520 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 SNAPC2Q13487 334 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 ZNF112Q9UJU3 913 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.51□□□□□ -0.73
USP28-203ENST00000537490 OTOFQ9HC10 1997 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 PDE4DIPQ5VU43 2346 aa10.51□□□□□ -0.73
USP28-203ENST00000537490 ZBTB22O15209 634 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 SRGAP3O43295 1099 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 TLR2O60603 784 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 GNAI3P08754 354 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 PPATQ06203 517 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 TFCP2Q12800 502 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 RASGRF1Q13972 1273 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 PRPF38BQ5VTL8 546 aaKnown RBP10.5□□□□□ -0.73
USP28-203ENST00000537490 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.5□□□□□ -0.73
USP28-203ENST00000537490 ARMC5Q96C12 935 aa10.5□□□□□ -0.73
USP28-203ENST00000537490 LAMB1P07942 1786 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 A0A1B0GUL7 405 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 BCAR3O75815 825 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 SLURP2P0DP57 97 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 TRIM27P14373 513 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 MTX1Q13505 466 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 SH3BP5LQ7L8J4 393 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 XAGE2Q96GT9 111 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 ARHGAP39Q9C0H5 1083 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 ZCCHC17Q9NP64 241 aaKnown RBP10.49□□□□□ -0.73
USP28-203ENST00000537490 ABCF2Q9UG63 623 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 PTCH2Q9Y6C5 1203 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 GAKO14976 1311 aa10.49□□□□□ -0.73
USP28-203ENST00000537490 EN2P19622 333 aaPredicted RBP10.48□□□□□ -0.73
USP28-203ENST00000537490 RGS3P49796 1198 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 MOGSQ13724 837 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 ARHGEF6Q15052 776 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 NOL9Q5SY16 702 aaKnown RBP10.48□□□□□ -0.73
USP28-203ENST00000537490 ZGPATQ8N5A5 531 aaKnown RBP10.48□□□□□ -0.73
USP28-203ENST00000537490 FRAT1Q92837 279 aaPredicted RBP10.48□□□□□ -0.73
USP28-203ENST00000537490 CLUAP1Q96AJ1 413 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 FAM163AQ96GL9 167 aaPredicted RBP10.48□□□□□ -0.73
USP28-203ENST00000537490 IDI2Q9BXS1 227 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 KCNH4Q9UQ05 1017 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 AKAP2Q9Y2D5 859 aa10.48□□□□□ -0.73
USP28-203ENST00000537490 PNMA6EA0A0J9YXQ4 647 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 DDTLA6NHG4 134 aaPredicted RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 PHF20L1A8MW92 1017 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 PDHXO00330 501 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 IPO8O15397 1037 aaKnown RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 ENTPD3O75355 529 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 WDHD1O75717 1129 aaPredicted RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 ECM2O94769 699 aaPredicted RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 GNAI2P04899 355 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 CTGFP29279 349 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 LACTBP83111 547 aaPredicted RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 MVPQ14764 893 aaKnown RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 C17orf99Q6UX52 265 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 ATF7IPQ6VMQ6 1270 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 ANKRD23Q86SG2 305 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 DZIP1Q86YF9 867 aaKnown RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 ZNF384Q8TF68 577 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 ZNF333Q96JL9 665 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 NEUROD6Q96NK8 337 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 DDX4Q9NQI0 724 aaKnown RBP10.47□□□□□ -0.73
USP28-203ENST00000537490 HMG20BQ9P0W2 317 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 CPA4Q9UI42 421 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 ATRNL1Q5VV63 1379 aa10.47□□□□□ -0.73
USP28-203ENST00000537490 BTDP43251 543 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms