RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 MS4A4AQ96JQ5 239 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 PTPN18Q99952 460 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 AKAP2Q9Y2D5 859 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 MYH2Q9UKX2 1941 aa17.27■□□□□ 0.35
SYNE1-235ENST00000537033 PHKA1P46020 1223 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 TAF1CQ15572 869 aaPredicted RBP17.26■□□□□ 0.35
SYNE1-235ENST00000537033 OTOP1Q7RTM1 612 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 FAM151AQ8WW52 585 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 BRI3BPQ8WY22 251 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 FRAT1Q92837 279 aaPredicted RBP17.26■□□□□ 0.35
SYNE1-235ENST00000537033 ZNF341Q9BYN7 854 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 ZFYVE28Q9HCC9 887 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 DOCK2Q92608 1830 aa17.26■□□□□ 0.35
SYNE1-235ENST00000537033 CETPP11597 493 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 TRIM27P14373 513 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 SP3Q02447 781 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 TCP10Q12799 353 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 ARHGEF6Q15052 776 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 CCDC102BQ68D86 513 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 CDC42EP5Q6NZY7 148 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 ATF7IPQ6VMQ6 1270 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 DZIP1Q86YF9 867 aaKnown RBP17.25■□□□□ 0.35
SYNE1-235ENST00000537033 CD99L2Q8TCZ2 262 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 SNCAIPQ9Y6H5 919 aa17.25■□□□□ 0.35
SYNE1-235ENST00000537033 ADORA1P30542 326 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 PPIL2Q13356 520 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 SNAPC2Q13487 334 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 MTX1Q13505 466 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 MVPQ14764 893 aaKnown RBP17.24■□□□□ 0.35
SYNE1-235ENST00000537033 MIGA2Q7L4E1 593 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 SLF2Q8IX21 1173 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 ZKSCAN4Q969J2 545 aaPredicted RBP17.24■□□□□ 0.35
SYNE1-235ENST00000537033 EFCC1Q9HA90 598 aa17.24■□□□□ 0.35
SYNE1-235ENST00000537033 PDS5AQ29RF7 1337 aaKnown RBP17.23■□□□□ 0.35
SYNE1-235ENST00000537033 A0A1B0GUL7 405 aa17.23■□□□□ 0.35
SYNE1-235ENST00000537033 ZBTB22O15209 634 aa17.23■□□□□ 0.35
SYNE1-235ENST00000537033 GNAI2P04899 355 aa17.23■□□□□ 0.35
SYNE1-235ENST00000537033 SPTY2D1Q68D10 685 aaPredicted RBP17.23■□□□□ 0.35
SYNE1-235ENST00000537033 USP40Q9NVE5 1235 aa17.23■□□□□ 0.35
SYNE1-235ENST00000537033 TIMM10P62072 90 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 PPATQ06203 517 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 TFCP2Q12800 502 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 NFIAQ12857 509 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 RASGRF1Q13972 1273 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 GORABQ5T7V8 394 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 FAM43AQ8N2R8 423 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 XAGE2Q96GT9 111 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 ZCCHC17Q9NP64 241 aaKnown RBP17.22■□□□□ 0.35
SYNE1-235ENST00000537033 ABCF2Q9UG63 623 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 PTPN22Q9Y2R2 807 aa17.22■□□□□ 0.35
SYNE1-235ENST00000537033 IRF6O14896 467 aa17.21■□□□□ 0.35
SYNE1-235ENST00000537033 BCAR3O75815 825 aa17.21■□□□□ 0.35
SYNE1-235ENST00000537033 CLUAP1Q96AJ1 413 aa17.21■□□□□ 0.35
SYNE1-235ENST00000537033 NEUROD6Q96NK8 337 aa17.21■□□□□ 0.35
SYNE1-235ENST00000537033 TNRC18O15417 2968 aaPredicted RBP17.21■□□□□ 0.35
SYNE1-235ENST00000537033 INPP5BP32019 993 aa17.2■□□□□ 0.34
SYNE1-235ENST00000537033 FAM198AQ9UFP1 575 aa17.2■□□□□ 0.34
SYNE1-235ENST00000537033 PDE4DIPQ5VU43 2346 aa17.2■□□□□ 0.34
SYNE1-235ENST00000537033 RBBP6Q7Z6E9 1792 aaKnown RBP17.2■□□□□ 0.34
SYNE1-235ENST00000537033 GAKO14976 1311 aa17.2■□□□□ 0.34
SYNE1-235ENST00000537033 ENTPD3O75355 529 aa17.19■□□□□ 0.34
SYNE1-235ENST00000537033 RGS3P49796 1198 aa17.19■□□□□ 0.34
SYNE1-235ENST00000537033 HNRNPUQ00839 825 aaKnown RBP eCLIP17.19■□□□□ 0.34
SYNE1-235ENST00000537033 G3BP1Q13283 466 aaKnown RBP eCLIP17.19■□□□□ 0.34
SYNE1-235ENST00000537033 KIF22Q14807 665 aa17.19■□□□□ 0.34
SYNE1-235ENST00000537033 ZKSCAN2Q63HK3 967 aa17.19■□□□□ 0.34
SYNE1-235ENST00000537033 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.19■□□□□ 0.34
SYNE1-235ENST00000537033 BTBD19C9JJ37 291 aa17.18■□□□□ 0.34
SYNE1-235ENST00000537033 ERICH6Q7L0X2 663 aa17.18■□□□□ 0.34
SYNE1-235ENST00000537033 ZSCAN29Q8IWY8 852 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-235ENST00000537033 IDI2Q9BXS1 227 aa17.18■□□□□ 0.34
SYNE1-235ENST00000537033 ZNF112Q9UJU3 913 aa17.18■□□□□ 0.34
SYNE1-235ENST00000537033 MROH7-TTC4A0A0A0MT08 1334 aa17.18■□□□□ 0.34
SYNE1-235ENST00000537033 TLR2O60603 784 aa17.17■□□□□ 0.34
SYNE1-235ENST00000537033 BTDP43251 543 aa17.17■□□□□ 0.34
SYNE1-235ENST00000537033 GSTO1P78417 241 aa17.17■□□□□ 0.34
SYNE1-235ENST00000537033 NOL9Q5SY16 702 aaKnown RBP17.17■□□□□ 0.34
SYNE1-235ENST00000537033 FTSJ3Q8IY81 847 aaKnown RBP17.17■□□□□ 0.34
SYNE1-235ENST00000537033 TNNQ9UQP3 1299 aa17.17■□□□□ 0.34
SYNE1-235ENST00000537033 RFX7Q2KHR2 1363 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 DOCK1Q14185 1865 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 OS9Q13438 667 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-235ENST00000537033 ANKRD23Q86SG2 305 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 TMEM57Q8N5G2 664 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 SPATA5Q8NB90 893 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 ARMC5Q96C12 935 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 FAM163AQ96GL9 167 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-235ENST00000537033 PICK1Q9NRD5 415 aa17.16■□□□□ 0.34
SYNE1-235ENST00000537033 MAST2Q6P0Q8 1798 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 PNMA6EA0A0J9YXQ4 647 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 LDHCP07864 332 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 UQCRFS1P1P0C7P4 283 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 MECOMQ03112 1051 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 PICALMQ13492 652 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 SLC9C1Q4G0N8 1177 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 PRPF38BQ5VTL8 546 aaKnown RBP17.15■□□□□ 0.34
SYNE1-235ENST00000537033 NBPF11Q86T75 865 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 ZFPM1Q8IX07 1006 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 HMG20BQ9P0W2 317 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 KCNH4Q9UQ05 1017 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms