RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 USP5P45974 858 aa5.57□□□□□ -1.52
SKA3-207ENST00000536239 GRIA4P48058 902 aa5.57□□□□□ -1.52
SKA3-207ENST00000536239 PRKCQQ04759 706 aa5.57□□□□□ -1.52
SKA3-207ENST00000536239 AAMPQ13685 434 aa5.57□□□□□ -1.52
SKA3-207ENST00000536239 LRRN4CLQ8ND94 238 aa5.57□□□□□ -1.52
SKA3-207ENST00000536239 GTF3C2Q8WUA4 911 aaPredicted RBP5.57□□□□□ -1.52
SKA3-207ENST00000536239 SYNGAP1Q96PV0 1343 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 A0A1W2PP55 124 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 POLR3DP05423 398 aaPredicted RBP5.56□□□□□ -1.52
SKA3-207ENST00000536239 MESP2Q0VG99 397 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 FAM181AQ8N9Y4 354 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 DDX54Q8TDD1 881 aaKnown RBP5.56□□□□□ -1.52
SKA3-207ENST00000536239 FAM84AQ96KN4 292 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 TCF12Q99081 682 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 WDR18Q9BV38 432 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 LIN7BQ9HAP6 207 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 PPP1R9AQ9ULJ8 1098 aa5.56□□□□□ -1.52
SKA3-207ENST00000536239 B3GALT4O96024 378 aa5.55□□□□□ -1.52
SKA3-207ENST00000536239 FAM87AP0C7U9 286 aa5.55□□□□□ -1.52
SKA3-207ENST00000536239 NPR3P17342 541 aa5.55□□□□□ -1.52
SKA3-207ENST00000536239 CD96P40200 585 aa5.55□□□□□ -1.52
SKA3-207ENST00000536239 MTMR3Q13615 1198 aa5.55□□□□□ -1.52
SKA3-207ENST00000536239 BHLHE22Q8NFJ8 381 aaPredicted RBP5.55□□□□□ -1.52
SKA3-207ENST00000536239 CDK5R2Q13319 367 aa5.54□□□□□ -1.52
SKA3-207ENST00000536239 PDE3AQ14432 1141 aa5.54□□□□□ -1.52
SKA3-207ENST00000536239 IFI16Q16666 785 aaKnown RBP5.54□□□□□ -1.52
SKA3-207ENST00000536239 GALNT12Q8IXK2 581 aa5.54□□□□□ -1.52
SKA3-207ENST00000536239 CCER1Q8TC90 406 aaPredicted RBP5.54□□□□□ -1.52
SKA3-207ENST00000536239 PBXIP1Q96AQ6 731 aa5.54□□□□□ -1.52
SKA3-207ENST00000536239 U3KQE9 123 aa5.54□□□□□ -1.52
SKA3-207ENST00000536239 LRRC10BA6NIK2 292 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 TMPRSS2O15393 492 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 FZD6O60353 706 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 FAM13AO94988 1023 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 AOC3Q16853 763 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 CILP2Q8IUL8 1156 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 GJD3Q8N144 294 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 KRTAP4-5Q9BYR2 181 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 MKNK2Q9HBH9 465 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 CRIM1Q9NZV1 1036 aa5.53□□□□□ -1.52
SKA3-207ENST00000536239 ZNF865P0CJ78 1059 aaPredicted RBP5.52□□□□□ -1.53
SKA3-207ENST00000536239 FLAD1Q8NFF5 587 aa5.52□□□□□ -1.53
SKA3-207ENST00000536239 HRASLS5Q96KN8 279 aa5.52□□□□□ -1.53
SKA3-207ENST00000536239 ZNF576Q9H609 170 aa5.52□□□□□ -1.53
SKA3-207ENST00000536239 PIDD1Q9HB75 910 aa5.52□□□□□ -1.53
SKA3-207ENST00000536239 FAM53CQ9NYF3 392 aa5.52□□□□□ -1.53
SKA3-207ENST00000536239 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.52□□□□□ -1.53
SKA3-207ENST00000536239 TMEM265A0A087WTH1 108 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 LIG1P18858 919 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 OXCT1P55809 520 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 AP3B2Q13367 1082 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 ANGEL2Q5VTE6 544 aaKnown RBP5.51□□□□□ -1.53
SKA3-207ENST00000536239 KIAA0319Q5VV43 1072 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 SLC23A3Q6PIS1 610 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 ZSWIM9Q86XI8 627 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 SMYD4Q8IYR2 804 aaPredicted RBP5.51□□□□□ -1.53
SKA3-207ENST00000536239 WDR89Q96FK6 387 aaPredicted RBP5.51□□□□□ -1.53
SKA3-207ENST00000536239 TOX2Q96NM4 488 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 FANCD2OSQ96PS1 177 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 ATXN3LQ9H3M9 355 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 CCDC87Q9NVE4 849 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 PLAGL2Q9UPG8 496 aa5.51□□□□□ -1.53
SKA3-207ENST00000536239 ZNF503-AS2A6NEH8 195 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 LEFTY1O75610 366 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 CEACAM5P06731 702 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 SLFN14P0C7P3 912 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 ITPKAP23677 461 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 CFPP27918 469 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 RAP1GAPP47736 663 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 MLANAQ16655 118 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 ARHGAP27Q6ZUM4 889 aa5.5□□□□□ -1.53
SKA3-207ENST00000536239 SSFA2P28290 1259 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 ID3Q02535 119 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 KCNMB1Q16558 191 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 LCE5AQ5TCM9 118 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 DUSP23Q9BVJ7 150 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 CCDC86Q9H6F5 360 aaKnown RBP5.49□□□□□ -1.53
SKA3-207ENST00000536239 DISC1Q9NRI5 854 aa5.49□□□□□ -1.53
SKA3-207ENST00000536239 RNGTTO60942 597 aaKnown RBP5.48□□□□□ -1.53
SKA3-207ENST00000536239 TSPAN15O95858 294 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 FKBP4Q02790 459 aaKnown RBP eCLIP5.48□□□□□ -1.53
SKA3-207ENST00000536239 PTPN12Q05209 780 aaKnown RBP5.48□□□□□ -1.53
SKA3-207ENST00000536239 SF3B2Q13435 895 aaKnown RBP5.48□□□□□ -1.53
SKA3-207ENST00000536239 LILRA6Q6PI73 481 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 C1QL4Q86Z23 238 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 TNKS2Q9H2K2 1166 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 PRDM7Q9NQW5 492 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 PCOLCE2Q9UKZ9 415 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 SNX11Q9Y5W9 270 aa5.48□□□□□ -1.53
SKA3-207ENST00000536239 ZNF862O60290 1169 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 TTLL4Q14679 1199 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 KIF4BQ2VIQ3 1234 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 USPL1Q5W0Q7 1092 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 LCNL1Q6ZST4 164 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 SIAH1Q8IUQ4 282 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 ZSCAN18Q8TBC5 510 aaPredicted RBP5.47□□□□□ -1.53
SKA3-207ENST00000536239 PPP1R16BQ96T49 567 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 ZC3H12CQ9C0D7 883 aaKnown RBP5.47□□□□□ -1.53
SKA3-207ENST00000536239 EHD4Q9H223 541 aa5.47□□□□□ -1.53
SKA3-207ENST00000536239 PCDHGC5Q9Y5F6 944 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms