RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ZNF274Q96GC6 653 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-233ENST00000535896 ATG3Q9NT62 314 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 ANO10Q9NW15 660 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 RCOR1Q9UKL0 485 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 PYCARDQ9ULZ3 195 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 PA2G4Q9UQ80 394 aaKnown RBP7.4□□□□□ -1.22
SYNE1-233ENST00000535896 FPGT-TNNI3KV9GXZ4 949 aa7.4□□□□□ -1.22
SYNE1-233ENST00000535896 ARAP2Q8WZ64 1704 aa7.4□□□□□ -1.23
SYNE1-233ENST00000535896 MYH3P11055 1940 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 AP5Z1O43299 807 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 KCNQ3O43525 872 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 NRDCO43847 1150 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 RFX5P48382 616 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-233ENST00000535896 FAM160A1Q05DH4 1040 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 IQCB1Q15051 598 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 PROSER3Q2NL68 480 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 SLC27A3Q5K4L6 730 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 C6orf132Q5T0Z8 1188 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 TRAF7Q6Q0C0 670 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 CCDC73Q6ZRK6 1079 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 DHX32Q7L7V1 743 aaKnown RBP7.39□□□□□ -1.23
SYNE1-233ENST00000535896 RIC3Q7Z5B4 369 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 CEP57L1Q8IYX8 460 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 NECAB1Q8N987 351 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 NFATC2IPQ8NCF5 419 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 BRF1Q92994 677 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 TRIM5Q9C035 493 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-233ENST00000535896 CLIP2Q9UDT6 1046 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 TSR3Q9UJK0 312 aaKnown RBP7.39□□□□□ -1.23
SYNE1-233ENST00000535896 HPS5Q9UPZ3 1129 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 ZNF831Q5JPB2 1677 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 CHD4Q14839 1912 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 LY75O60449 1722 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 ANKRD36CQ5JPF3 1778 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 ECM29Q5VYK3 1845 aa7.39□□□□□ -1.23
SYNE1-233ENST00000535896 RREB1Q92766 1687 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CCP110O43303 1012 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 DHX16O60231 1041 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 KINO60870 393 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CIAO1O76071 339 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 SNRPA1P09661 255 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 PTGS1P23219 599 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 PTPN12Q05209 780 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 GABPB1Q06547 395 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 TAF3Q5VWG9 929 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 PTF1AQ7RTS3 328 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CCDC186Q7Z3E2 898 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 LRP10Q7Z4F1 713 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 ZNF589Q86UQ0 364 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 LUZP1Q86V48 1076 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 TTC5Q8N0Z6 440 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CCDC150Q8NCX0 1101 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 NSUN7Q8NE18 718 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CCDC112Q8NEF3 446 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 PGBD1Q96JS3 809 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 ZNF830Q96NB3 372 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CAMKK2Q96RR4 588 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 EPAS1Q99814 870 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 OSBPL5Q9H0X9 879 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 BOLA2Q9H3K6 86 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 DBNLQ9UJU6 430 aaKnown RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 PRDM4Q9UKN5 801 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 MAP3K15Q6ZN16 1313 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CARMIL3Q8ND23 1372 aa7.38□□□□□ -1.23
SYNE1-233ENST00000535896 CICQ96RK0 1608 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-233ENST00000535896 GFRA3O60609 400 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 NR1I2O75469 434 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 YEATS4O95619 227 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 ZFYP08048 801 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 CYP21A2P08686 494 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 ADD1P35611 737 aaKnown RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 IL15P40933 162 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 TPM4P67936 248 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 EXOSC10Q01780 885 aaKnown RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 EN1Q05925 392 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 ZMYM1Q5SVZ6 1142 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 Q6ZUG5 572 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 BRAPQ7Z569 592 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 FERMT3Q86UX7 667 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 DRC7Q8IY82 874 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 PLBD2Q8NHP8 589 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 KCNG4Q8TDN1 519 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 LRCH3Q96II8 777 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 FMNL2Q96PY5 1086 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 CCDC8Q9H0W5 538 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 POLR3EQ9NVU0 708 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 TLR7Q9NYK1 1049 aaKnown RBP7.37□□□□□ -1.23
SYNE1-233ENST00000535896 RTEL1Q9NZ71 1219 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 OGFRQ9NZT2 677 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 CTNNA3Q9UI47 895 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 TIAM2Q8IVF5 1701 aa7.37□□□□□ -1.23
SYNE1-233ENST00000535896 KCPQ6ZWJ8 1503 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 LOC102724428A0A0B4J2F2 783 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 PTPDC1A2A3K4 754 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 BECN2A8MW95 431 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 ANXA1P04083 346 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 TNNT1P13805 278 aa7.36□□□□□ -1.23
SYNE1-233ENST00000535896 HSP90B1P14625 803 aaKnown RBP7.36□□□□□ -1.23
SYNE1-233ENST00000535896 ZSCAN20P17040 1043 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms