RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 ZNF569Q5MCW4 686 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 LEO1Q8WVC0 666 aaPredicted RBP20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 IFT81Q8WYA0 676 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 TSGA10Q9BZW7 698 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 DDX21Q9NR30 783 aaKnown RBP eCLIP20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 MAP3K1Q13233 1512 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 NCKAP5LQ9HCH0 1330 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 INF2Q27J81 1249 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 IP6K1Q92551 441 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 IFNKQ9P0W0 207 aa20.4■□□□□ 0.86
SFSWAP-203ENST00000535236 VAMP4O75379 141 aa20.39■□□□□ 0.86
SFSWAP-203ENST00000535236 HAUS3Q68CZ6 603 aa20.39■□□□□ 0.86
SFSWAP-203ENST00000535236 MSL1Q68DK7 614 aa20.39■□□□□ 0.86
SFSWAP-203ENST00000535236 EIF6P56537 245 aaKnown RBP20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 STRN3Q13033 797 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 CFAP157Q5JU67 520 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 TSPYL6Q8N831 410 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 KIFC2Q96AC6 838 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 SH3TC1Q8TE82 1336 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 ZFP91Q96JP5 570 aaPredicted RBP20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 AGTPBP1Q9UPW5 1226 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 ALDH3A1P30838 453 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 SMC1BQ8NDV3 1235 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 PLBD2Q8NHP8 589 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 ELP1O95163 1332 aa20.39■□□□□ 0.85
SFSWAP-203ENST00000535236 ABCC1P33527 1531 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 EYA2O00167 538 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 NOP56O00567 594 aaKnown RBP20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 TRPC3Q13507 836 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 TRPM2O94759 1503 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 DKC1O60832 514 aaKnown RBP eCLIP20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 RASA3Q14644 834 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 CNGA4Q8IV77 575 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 DUOX2Q9NRD8 1548 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 A0A1B0GUL7 405 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 B4E1Z4 1266 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 KRT24Q2M2I5 525 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 ARMT1Q9H993 441 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 TLDC2A0PJX2 215 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 DEXIO95424 95 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 CHMLP26374 656 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 TUBB4BP68371 445 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 NOC4LQ9BVI4 516 aaKnown RBP20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 KCNK9Q9NPC2 374 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 EXOC7Q9UPT5 735 aa20.38■□□□□ 0.85
SFSWAP-203ENST00000535236 HOOK2Q96ED9 719 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 CFAP57Q96MR6 1250 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 VAV2P52735 878 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 TMEM87BQ96K49 555 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 GLT8D2Q9H1C3 349 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 PODXL2Q9NZ53 605 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 CTNND2Q9UQB3 1225 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 PDE4DQ08499 809 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 RILPL1Q5EBL4 403 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 ATL3Q6DD88 541 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 TNFAIP3P21580 790 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 KRT9P35527 623 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 HSPA2P54652 639 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 CSRNP2Q9H175 543 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 FAM204AQ9H8W3 233 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 POLR3AO14802 1390 aaPredicted RBP20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 YTHDC2Q9H6S0 1430 aaKnown RBP20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 CCNT1O60563 726 aaKnown RBP20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 PDE8AO60658 829 aa20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 ZYXQ15942 572 aaKnown RBP20.37■□□□□ 0.85
SFSWAP-203ENST00000535236 MYCLP12524 364 aaPredicted RBP20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 VWA3BQ502W6 1294 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 PROCA1Q8NCQ7 364 aaPredicted RBP20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 TIGD1Q96MW7 591 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 RSPH14Q9UHP6 348 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 CALUO43852 315 aaPredicted RBP20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 TRIM7Q9C029 511 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 E7EVH7 732 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 CNNM4Q6P4Q7 775 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 IPO4Q8TEX9 1081 aaKnown RBP20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 SPOPO43791 374 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 IVLP07476 585 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 PIK3AP1Q6ZUJ8 805 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 ZFYVE9O95405 1425 aa20.36■□□□□ 0.85
SFSWAP-203ENST00000535236 DPP8Q6V1X1 898 aaPredicted RBP20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 LARGE2Q8N3Y3 721 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 ARHGEF35A5YM69 484 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 TPD52P55327 224 aaPredicted RBP20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 TRIM6Q9C030 488 aaPredicted RBP20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 NUP160Q12769 1436 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 MNAT1P51948 309 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 CERS3Q8IU89 383 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 HAUS7Q99871 368 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 GINS2Q9Y248 185 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 H0YIN7 160 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 ERCC5P28715 1186 aaPredicted RBP20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 TIMM10P62072 90 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 MYL5Q02045 173 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 CCDC122Q5T0U0 273 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 LIN9Q5TKA1 542 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 CCDC121Q6ZUS5 278 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 WDR66Q8TBY9 1149 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 CCT6BQ92526 530 aa20.35■□□□□ 0.85
SFSWAP-203ENST00000535236 METTL22Q9BUU2 404 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms