RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	HSP90AA1	P07900	732 aa	Known RBP	11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	HIRA	P54198	1017 aa	Predicted RBP	11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	NBR1	Q14596	966 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	PNMA8A	Q86V59	439 aa	Predicted RBP	11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	MAGEB6	Q8N7X4	407 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	KBTBD3	Q8NAB2	608 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	ZNF384	Q8TF68	577 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	NSUN4	Q96CB9	384 aa	Known RBP	11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	IL17RA	Q96F46	866 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	FSD1	Q9BTV5	496 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.32	□□□□□ -0.6	4e-7	■■■■■ 37.3
NXF1-209	ENST00000531474	CLEC11A	Q9Y240	323 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	DAGLA	Q9Y4D2	1042 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	AKAP11	Q9UKA4	1901 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	SCN4A	P35499	1836 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	MROH7-TTC4	A0A0A0MT08	1334 aa		11.32	□□□□□ -0.6
NXF1-209	ENST00000531474	MAST2	Q6P0Q8	1798 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	ADAMTSL1	Q8N6G6	1762 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	SPDYE2B	A6NHP3	402 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	WNT10B	O00744	389 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	KIF3C	O14782	793 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	LDHC	P07864	332 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	SPDYE6	P0CI01	402 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	PDE6A	P16499	860 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	CYP7A1	P22680	504 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	NFKBIB	Q15653	356 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	NBPF9	Q3BBW0	867 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	SLC9C2	Q5TAH2	1124 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	HHIPL2	Q6UWX4	724 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	MTMR14	Q8NCE2	650 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	PRMT6	Q96LA8	375 aa	Predicted RBP	11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	ZDHHC15	Q96MV8	337 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	MRI	Q9BWK5	157 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	CWC22	Q9HCG8	908 aa	Known RBP	11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	ASTN2	O75129	1339 aa	Predicted RBP	11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	AK9	Q5TCS8	1911 aa		11.31	□□□□□ -0.6
NXF1-209	ENST00000531474	CLRN2	A0PK11	232 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	SGSM2	O43147	1006 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	MYO1B	O43795	1136 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	IGSF3	O75054	1194 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	POTEI	P0CG38	1075 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	POTEJ	P0CG39	1038 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	BTD	P43251	543 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	ANGEL2	Q5VTE6	544 aa	Known RBP	11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	ZSCAN25	Q6NSZ9	544 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	LDHD	Q86WU2	507 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	ZBED3	Q96IU2	234 aa	Predicted RBP	11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	NOL10	Q9BSC4	688 aa	Known RBP	11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	VEZT	Q9HBM0	779 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	ANO2	Q9NQ90	1003 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	DIAPH3	Q9NSV4	1193 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	GGA3	Q9NZ52	723 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	GAK	O14976	1311 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	ZNF532	Q9HCE3	1301 aa		11.3	□□□□□ -0.6
NXF1-209	ENST00000531474	CHGB	P05060	677 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	PTMS	P20962	102 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	ADD2	P35612	726 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	SLFNL1	Q499Z3	407 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	TMED8	Q6PL24	325 aa	Predicted RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	ADGRA1	Q86SQ6	560 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	MIGA1	Q8NAN2	632 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	FAM163A	Q96GL9	167 aa	Predicted RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	SLK	Q9H2G2	1235 aa	Predicted RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	TDRD3	Q9H7E2	651 aa	Known RBP	11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	USP40	Q9NVE5	1235 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	TMOD2	Q9NZR1	351 aa		11.29	□□□□□ -0.6
NXF1-209	ENST00000531474	DOCK2	Q92608	1830 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	GPR75-ASB3	A0A0A6YYF3	556 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	TCRBV5S4A2T	A0A5A2	114 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	RNF113A	O15541	343 aa	Known RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	BAG3	O95817	575 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	MYCN	P04198	464 aa	Predicted RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	CACNB3	P54284	484 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	SPDYE2	Q495Y8	402 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	MAP1S	Q66K74	1059 aa	Predicted RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	CHADL	Q6NUI6	762 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	ZC3H15	Q8WU90	426 aa	Known RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	DCPS	Q96C86	337 aa	Known RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	ZNF70	Q9UC06	446 aa	Predicted RBP	11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	RAD50	Q92878	1312 aa		11.28	□□□□□ -0.6
NXF1-209	ENST00000531474	MAGEB6P1	A0A0J9YX57	407 aa		11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	ZFY	P08048	801 aa	Predicted RBP	11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	DYNLL1	P63167	89 aa	Known RBP	11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	UBE3C	Q15386	1083 aa		11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	CDC42EP5	Q6NZY7	148 aa		11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	SULF1	Q8IWU6	871 aa		11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	SCAF8	Q9UPN6	1271 aa	Known RBP	11.27	□□□□□ -0.61
NXF1-209	ENST00000531474	TCP10L2	B9ZVM9	353 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	ADM5	C9JUS6	153 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	TOMM70	O94826	608 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	PLCG2	P16885	1265 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	HSPA4	P34932	840 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	KRT26	Q7Z3Y9	468 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	USP48	Q86UV5	1035 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	TEX11	Q8IYF3	940 aa		11.26	□□□□□ -0.61
NXF1-209	ENST00000531474	SMC1B	Q8NDV3	1235 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms