RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 GPR25O00155 361 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 BRD1O95696 1058 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 MBD3O95983 291 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 AK2P54819 239 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 PTH1RQ03431 593 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 BLOC1S2Q6QNY1 142 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 DLK2Q6UY11 383 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 KBTBD3Q8NAB2 608 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 CDCA5Q96FF9 252 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 FAM227BQ96M60 508 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 CFHR5Q9BXR6 569 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 ALDH8A1Q9H2A2 487 aaPredicted RBP13.96□□□□□ -0.17
USF1-208ENST00000528768 HELLSQ9NRZ9 838 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 GGA3Q9NZ52 723 aa13.96□□□□□ -0.17
USF1-208ENST00000528768 FSD2A1L4K1 749 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 SLC27A2O14975 620 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 IFIT1P09914 478 aaKnown RBP13.95□□□□□ -0.18
USF1-208ENST00000528768 TM4SF4P48230 202 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 SREBF2Q12772 1141 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 CSPP1Q1MSJ5 1256 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 TSGA10IPQ3SY00 556 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 RBM26Q5T8P6 1007 aaKnown RBP13.95□□□□□ -0.18
USF1-208ENST00000528768 ATG9AQ7Z3C6 839 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 RASEFQ8IZ41 740 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 PAPPA2Q9BXP8 1791 aa13.95□□□□□ -0.18
USF1-208ENST00000528768 POLR2AP24928 1970 aaKnown RBP13.94□□□□□ -0.18
USF1-208ENST00000528768 PITPNM2Q9BZ72 1349 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 ANKRD18BA2A2Z9 1011 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 ZNF609O15014 1411 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 FKTNO75072 461 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 CSF1RP07333 972 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 ZFYP08048 801 aaPredicted RBP13.94□□□□□ -0.18
USF1-208ENST00000528768 HMGB1P09429 215 aaKnown RBP13.94□□□□□ -0.18
USF1-208ENST00000528768 TTC39AQ5SRH9 613 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 DDX60Q8IY21 1712 aaKnown RBP13.94□□□□□ -0.18
USF1-208ENST00000528768 SYAP1Q96A49 352 aaPredicted RBP13.94□□□□□ -0.18
USF1-208ENST00000528768 PAG1Q9NWQ8 432 aa13.94□□□□□ -0.18
USF1-208ENST00000528768 SH3TC1Q8TE82 1336 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 DUOX1Q9NRD9 1551 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 A0A0D9SFI3 127 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 A0A1B0GUL7 405 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 TAF5LO75529 589 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 TBC1D8O95759 1140 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 EGFRP00533 1210 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 ANP32BQ92688 251 aaKnown RBP13.93□□□□□ -0.18
USF1-208ENST00000528768 DBNDD1Q9H9R9 158 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 LRRC37AA6NMS7 1700 aa13.93□□□□□ -0.18
USF1-208ENST00000528768 C6orf229H3BNL8 230 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 ECE2O60344 883 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 PDE8AO60658 829 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 ALDH1A1P00352 501 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 VIL1P09327 827 aaKnown RBP13.92□□□□□ -0.18
USF1-208ENST00000528768 PDCP20941 246 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 ZSCAN25Q6NSZ9 544 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 NLRP10Q86W26 655 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 AGBL3Q8NEM8 1001 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 LMBRD1Q9NUN5 540 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 TRMT112Q9UI30 125 aaKnown RBP13.92□□□□□ -0.18
USF1-208ENST00000528768 NSFL1CQ9UNZ2 370 aaKnown RBP13.92□□□□□ -0.18
USF1-208ENST00000528768 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.92□□□□□ -0.18
USF1-208ENST00000528768 SPEF2Q9C093 1822 aa13.92□□□□□ -0.18
USF1-208ENST00000528768 GOLIM4O00461 696 aa13.91□□□□□ -0.18
USF1-208ENST00000528768 RNF113AO15541 343 aaKnown RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 PRPF40AO75400 957 aaKnown RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 HCLS1P14317 486 aaPredicted RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 RPS6KB1P23443 525 aa13.91□□□□□ -0.18
USF1-208ENST00000528768 FXR1P51114 621 aaKnown RBP eCLIP13.91□□□□□ -0.18
USF1-208ENST00000528768 ZNF280AP59817 542 aaPredicted RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 ANGEL2Q5VTE6 544 aaKnown RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 FAM89AQ96GI7 184 aa13.91□□□□□ -0.18
USF1-208ENST00000528768 DSCC1Q9BVC3 393 aa13.91□□□□□ -0.18
USF1-208ENST00000528768 ZDHHC9Q9Y397 364 aa13.91□□□□□ -0.18
USF1-208ENST00000528768 RPAP1Q9BWH6 1393 aaPredicted RBP13.91□□□□□ -0.18
USF1-208ENST00000528768 G3V3G9 751 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 IRS4O14654 1257 aaPredicted RBP13.9□□□□□ -0.18
USF1-208ENST00000528768 NF2P35240 595 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 CTSWP56202 376 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 TIMM10P62072 90 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 SCARF1Q14162 830 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 LRRC24Q50LG9 513 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 METTL24Q5JXM2 366 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 DCAF8Q5TAQ9 597 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 ZNF594Q96JF6 807 aaPredicted RBP13.9□□□□□ -0.18
USF1-208ENST00000528768 ZC3H12CQ9C0D7 883 aaKnown RBP13.9□□□□□ -0.18
USF1-208ENST00000528768 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.9□□□□□ -0.18
USF1-208ENST00000528768 GRPEL1Q9HAV7 217 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 CNNM1Q9NRU3 951 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 CTNNA3Q9UI47 895 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 RTL9Q8NET4 1388 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 LAMB2P55268 1798 aa13.9□□□□□ -0.18
USF1-208ENST00000528768 RIMBP2O15034 1052 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 STX6O43752 255 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 ZSCAN22P10073 491 aaPredicted RBP13.89□□□□□ -0.19
USF1-208ENST00000528768 INHBEP58166 350 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 PKP1Q13835 747 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 TTF1Q15361 905 aaPredicted RBP13.89□□□□□ -0.19
USF1-208ENST00000528768 ATP2B3Q16720 1220 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 ADCK5Q3MIX3 580 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 ZMYM1Q5SVZ6 1142 aa13.89□□□□□ -0.19
USF1-208ENST00000528768 LDHAL6AQ6ZMR3 332 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms