RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SSBP05455 408 aaKnown RBP eCLIP7□□□□□ -1.29
CD44-220ENST00000525688 COL9A3Q14050 684 aaPredicted RBP7□□□□□ -1.29
CD44-220ENST00000525688 SEPT6Q14141 434 aa7□□□□□ -1.29
CD44-220ENST00000525688 CWF19L2Q2TBE0 894 aaKnown RBP7□□□□□ -1.29
CD44-220ENST00000525688 NBPF6Q5VWK0 638 aa7□□□□□ -1.29
CD44-220ENST00000525688 HGSNATQ68CP4 663 aa7□□□□□ -1.29
CD44-220ENST00000525688 WFDC8Q8IUA0 241 aa7□□□□□ -1.29
CD44-220ENST00000525688 MAP4K3Q8IVH8 894 aa7□□□□□ -1.29
CD44-220ENST00000525688 REXO1Q8N1G1 1221 aaKnown RBP7□□□□□ -1.29
CD44-220ENST00000525688 KLHL23Q8NBE8 558 aa7□□□□□ -1.29
CD44-220ENST00000525688 FBXO27Q8NI29 283 aa7□□□□□ -1.29
CD44-220ENST00000525688 JARID2Q92833 1246 aaPredicted RBP7□□□□□ -1.29
CD44-220ENST00000525688 NBPF4Q96M43 638 aa7□□□□□ -1.29
CD44-220ENST00000525688 CBX8Q9HC52 389 aa7□□□□□ -1.29
CD44-220ENST00000525688 KRT82Q9NSB4 513 aa7□□□□□ -1.29
CD44-220ENST00000525688 SHISA8B8ZZ34 492 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 RPL6Q02878 288 aaKnown RBP6.99□□□□□ -1.29
CD44-220ENST00000525688 GSTM4Q03013 218 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 PTPN11Q06124 597 aaPredicted RBP6.99□□□□□ -1.29
CD44-220ENST00000525688 SEZ6Q53EL9 994 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 C8orf86Q6ZUL3 223 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 REC114Q7Z4M0 266 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 SLC7A3Q8WY07 619 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 ZNF408Q9H9D4 720 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 NACADO15069 1562 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 RB1CC1Q8TDY2 1594 aa6.99□□□□□ -1.29
CD44-220ENST00000525688 NID1P14543 1247 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 CDC25BP30305 580 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 ZNF165P49910 485 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 SETDB1Q15047 1291 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 POU4F3Q15319 338 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 MAP1SQ66K74 1059 aaPredicted RBP6.98□□□□□ -1.29
CD44-220ENST00000525688 TXNDC11Q6PKC3 985 aa6.98□□□□□ -1.29
CD44-220ENST00000525688 MYO15BQ96JP2 1530 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 TLR3O15455 904 aaKnown RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 BPNT1O95861 308 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 CELA2BP08218 269 aaPredicted RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 SUZ12Q15022 739 aaKnown RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 CCDC144BQ3MJ40 725 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 MPRIPQ6WCQ1 1025 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 NOP9Q86U38 636 aaKnown RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 CKAP2LQ8IYA6 745 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 RBBP8NLQ8NC74 664 aaPredicted RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 KCNB2Q92953 911 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 KLHDC7BQ96G42 594 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 SHDQ96IW2 340 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 CORO1BQ9BR76 489 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 SRRTQ9BXP5 876 aaKnown RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 EHMT1Q9H9B1 1298 aa6.97□□□□□ -1.29
CD44-220ENST00000525688 ZCCHC6Q5VYS8 1495 aaKnown RBP6.97□□□□□ -1.29
CD44-220ENST00000525688 ATE1O95260 518 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 IMPDH2P12268 514 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 HOXB4P17483 251 aaPredicted RBP6.96□□□□□ -1.3
CD44-220ENST00000525688 MAOBP27338 520 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 ETFBP38117 255 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 HNRNPUQ00839 825 aaKnown RBP eCLIP6.96□□□□□ -1.3
CD44-220ENST00000525688 LYPD4Q6UWN0 246 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 DTWD1Q8N5C7 304 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 GPBAR1Q8TDU6 330 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 DCAF11Q8TEB1 546 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 CPLX3Q8WVH0 158 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 BRMS1Q9HCU9 246 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 ZNRF3Q9ULT6 936 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 SYNGAP1Q96PV0 1343 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 PRR36Q9H6K5 1346 aa6.96□□□□□ -1.3
CD44-220ENST00000525688 GFRA2O00451 464 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 KLF4O43474 513 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 ECEL1O95672 775 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 SELPP16109 830 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 MCM4P33991 863 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 GIPRP48546 466 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 DGKGP49619 791 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 HP1BP3Q5SSJ5 553 aaPredicted RBP6.95□□□□□ -1.3
CD44-220ENST00000525688 LCE2CQ5TA81 110 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 DMRTC2Q8IXT2 367 aaPredicted RBP6.95□□□□□ -1.3
CD44-220ENST00000525688 GALNT11Q8NCW6 608 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 OR6P1Q8NGX9 317 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 PMFBP1Q8TBY8 1022 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 CARD10Q9BWT7 1032 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 OSBPL2Q9H1P3 480 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 CCDC86Q9H6F5 360 aaKnown RBP6.95□□□□□ -1.3
CD44-220ENST00000525688 PRKAG3Q9UGI9 489 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 PPT2Q9UMR5 302 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 TACC3Q9Y6A5 838 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 SNCAIPQ9Y6H5 919 aa6.95□□□□□ -1.3
CD44-220ENST00000525688 ZNF862O60290 1169 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 AMPD1P23109 780 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 GMPRP36959 345 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 EIF6P56537 245 aaKnown RBP6.94□□□□□ -1.3
CD44-220ENST00000525688 CLCQ05315 142 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 SERINC3Q13530 473 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 KIF4BQ2VIQ3 1234 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.94□□□□□ -1.3
CD44-220ENST00000525688 MKL1Q969V6 931 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 FERD3LQ96RJ6 166 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 PCDHA4Q9UN74 947 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 POLR3KQ9Y2Y1 108 aaPredicted RBP6.94□□□□□ -1.3
CD44-220ENST00000525688 MRVI1Q9Y6F6 885 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 CADPSQ9ULU8 1353 aa6.94□□□□□ -1.3
CD44-220ENST00000525688 DCAF1Q9Y4B6 1507 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms