RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 SERTAD1Q9UHV2 236 aa9.48□□□□□ -0.89
SDCBP-210ENST00000522843 NSD3Q9BZ95 1437 aa9.48□□□□□ -0.89
SDCBP-210ENST00000522843 SPDYE3A6NKU9 549 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 ALAS2P22557 587 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 ITPK1Q13572 414 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 SAMD5Q5TGI4 173 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 ERICH6Q7L0X2 663 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 GDPD2Q9HCC8 539 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 IQSEC3Q9UPP2 1182 aaPredicted RBP9.47□□□□□ -0.89
SDCBP-210ENST00000522843 TNRC6CQ9HCJ0 1690 aaKnown RBP9.47□□□□□ -0.89
SDCBP-210ENST00000522843 PLEKHG2Q9H7P9 1386 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 ARFGEF1Q9Y6D6 1849 aa9.47□□□□□ -0.89
SDCBP-210ENST00000522843 EDC4Q6P2E9 1401 aaKnown RBP9.47□□□□□ -0.89
SDCBP-210ENST00000522843 ELOA3CA0A087WX78 387 aaPredicted RBP9.46□□□□□ -0.9
SDCBP-210ENST00000522843 A6NJY4 79 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 ELOA3DA6NLF2 546 aaPredicted RBP9.46□□□□□ -0.9
SDCBP-210ENST00000522843 CYP27B1O15528 508 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 LAMC2Q13753 1193 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 MTFR1Q15390 333 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 RSPO4Q2I0M5 234 aaPredicted RBP9.46□□□□□ -0.9
SDCBP-210ENST00000522843 ELOA3BQ3SY89 546 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 SMC1BQ8NDV3 1235 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 ELOA3Q8NG57 546 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 PIGBQ92521 554 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 SLC12A5Q9H2X9 1139 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 SBF1O95248 1867 aa9.46□□□□□ -0.9
SDCBP-210ENST00000522843 PRRT3Q5FWE3 981 aa9.45□□□□□ -0.9
SDCBP-210ENST00000522843 KDM2BQ8NHM5 1336 aa9.45□□□□□ -0.9
SDCBP-210ENST00000522843 A0A1W2PP64 1363 aa9.45□□□□□ -0.9
SDCBP-210ENST00000522843 C4AP0C0L4 1744 aa9.45□□□□□ -0.9
SDCBP-210ENST00000522843 LOC102724428A0A0B4J2F2 783 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 KRTAP9-6A0A140TA67 174 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 TMEM229AB2RXF0 380 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 EFSO43281 561 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 SIK1P57059 783 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 MCM6Q14566 821 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 NKAPLQ5M9Q1 402 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 PLPP7Q8NBV4 271 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 RNF181Q9P0P0 153 aa9.44□□□□□ -0.9
SDCBP-210ENST00000522843 CGNL1Q0VF96 1302 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 PCDH11XQ9BZA7 1347 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 PCDH11YQ9BZA8 1340 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 FOXN1O15353 648 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 ABL2P42684 1182 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 VAC14Q08AM6 782 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 BICDL1Q6ZP65 573 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 SYT9Q86SS6 491 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 SMARCC1Q92922 1105 aaPredicted RBP9.43□□□□□ -0.9
SDCBP-210ENST00000522843 USP3Q9Y6I4 520 aa9.43□□□□□ -0.9
SDCBP-210ENST00000522843 GYS1P13807 737 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 AMPHP49418 695 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 TMC1Q8TDI8 760 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 L3MBTL2Q969R5 705 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 MDFIQ99750 246 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 TPSG1Q9NRR2 321 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 ASAP1Q9ULH1 1129 aa9.42□□□□□ -0.9
SDCBP-210ENST00000522843 KDM6AO15550 1401 aaPredicted RBP9.41□□□□□ -0.9
SDCBP-210ENST00000522843 SCO2A0A1W2PP80 73 aa9.41□□□□□ -0.9
SDCBP-210ENST00000522843 HMGB2P26583 209 aaKnown RBP9.41□□□□□ -0.9
SDCBP-210ENST00000522843 RRS1Q15050 365 aaKnown RBP9.41□□□□□ -0.9
SDCBP-210ENST00000522843 HDGFL2Q7Z4V5 671 aaPredicted RBP9.41□□□□□ -0.9
SDCBP-210ENST00000522843 RAPGEF4Q8WZA2 1011 aa9.41□□□□□ -0.9
SDCBP-210ENST00000522843 PARP3Q9Y6F1 533 aa9.41□□□□□ -0.9
SDCBP-210ENST00000522843 RTL1A6NKG5 1358 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 KDRP35968 1356 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 SIN3BO75182 1162 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 TMF1P82094 1093 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 NLGN1Q8N2Q7 840 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 CCDC87Q9NVE4 849 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 PIM2Q9P1W9 311 aa9.4□□□□□ -0.9
SDCBP-210ENST00000522843 ROCK2O75116 1388 aaKnown RBP9.39□□□□□ -0.91
SDCBP-210ENST00000522843 ADARB2-AS1A8MUL3 147 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 CHRNA5P30532 468 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 TXLNAP40222 546 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 DDR1Q08345 913 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 FOXD4L6Q3SYB3 417 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-210ENST00000522843 HSP90AB2PQ58FF8 381 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 DALRD3Q5D0E6 543 aaKnown RBP9.39□□□□□ -0.91
SDCBP-210ENST00000522843 FOXD4L3Q6VB84 417 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-210ENST00000522843 PRDM10Q9NQV6 1147 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 ATG3Q9NT62 314 aa9.39□□□□□ -0.91
SDCBP-210ENST00000522843 MKRN1Q9UHC7 482 aaKnown RBP9.39□□□□□ -0.91
SDCBP-210ENST00000522843 MYH14Q7Z406 1995 aaKnown RBP9.38□□□□□ -0.91
SDCBP-210ENST00000522843 GLTPD2A6NH11 291 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 BACH1O14867 736 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 DYRK3O43781 588 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 VEGFAP15692 232 aaPredicted RBP9.38□□□□□ -0.91
SDCBP-210ENST00000522843 SEMA3FQ13275 785 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 TRAPPC3LQ5T215 181 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 COG3Q96JB2 828 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 NACC1Q96RE7 527 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 PRDM6Q9NQX0 595 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 COG6Q9Y2V7 657 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 PCDHGA11Q9Y5H2 935 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 NCAPD2Q15021 1401 aa9.38□□□□□ -0.91
SDCBP-210ENST00000522843 COL5A3P25940 1745 aaPredicted RBP9.37□□□□□ -0.91
SDCBP-210ENST00000522843 M0R082 166 aa9.37□□□□□ -0.91
SDCBP-210ENST00000522843 TRIM28Q13263 835 aaKnown RBP9.37□□□□□ -0.91
SDCBP-210ENST00000522843 COL9A3Q14050 684 aaPredicted RBP9.37□□□□□ -0.91
SDCBP-210ENST00000522843 WASHC4Q2M389 1173 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms