RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ELP1O95163 1332 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 TMCO5BA8MYB1 307 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 GNAT2P19087 354 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 AMPD3Q01432 767 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 ZNF827Q17R98 1081 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 SPATA5Q8NB90 893 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 SDR42E1Q8WUS8 393 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 KIF2CQ99661 725 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 GREM2Q9H772 168 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 RGS12O14924 1447 aa13.3□□□□□ -0.28
SYNPO-204ENST00000519664 PSMA7O14818 248 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 RDXP35241 583 aaKnown RBP13.29□□□□□ -0.28
SYNPO-204ENST00000519664 BCAMP50895 628 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 KCNQ4P56696 695 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 LETM2Q2VYF4 491 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 IQCEQ6IPM2 695 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 LPIN2Q92539 896 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 AXIN2Q9Y2T1 843 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 NFE2L3Q9Y4A8 694 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 ATP7BP35670 1465 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 PNOCQ13519 176 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 HLTFQ14527 1009 aaKnown RBP eCLIP13.29□□□□□ -0.28
SYNPO-204ENST00000519664 ZNF569Q5MCW4 686 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 TMEM87BQ96K49 555 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 CAPZA3Q96KX2 299 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 XPO4Q9C0E2 1151 aaKnown RBP13.29□□□□□ -0.28
SYNPO-204ENST00000519664 CCDC175P0C221 793 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 RHOXF2BP0C7M4 288 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 PHKA1P46020 1223 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 UBXN1Q04323 297 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 PRPF4BQ13523 1007 aaKnown RBP13.29□□□□□ -0.28
SYNPO-204ENST00000519664 FAM47AQ5JRC9 791 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 EEF2KMTQ96G04 330 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 CLIC6Q96NY7 704 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 RHOXF2Q9BQY4 288 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 DSCC1Q9BVC3 393 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 ARFGAP3Q9NP61 516 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 EFCAB6Q5THR3 1501 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 GOLGA6L9A6NEM1 432 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 GYG1P46976 350 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 RILPL1Q5EBL4 403 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 GBP3Q9H0R5 595 aa13.29□□□□□ -0.28
SYNPO-204ENST00000519664 LDHBP07195 334 aaKnown RBP13.28□□□□□ -0.28
SYNPO-204ENST00000519664 DMTNQ08495 405 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 IQUBQ8NA54 791 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 BTBD18B2RXH4 712 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 SNAP23O00161 211 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 PDIA3P30101 505 aaKnown RBP13.28□□□□□ -0.28
SYNPO-204ENST00000519664 PTPN12Q05209 780 aaKnown RBP13.28□□□□□ -0.28
SYNPO-204ENST00000519664 SLF2Q8IX21 1173 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 BAG1Q99933 345 aaPredicted RBP13.28□□□□□ -0.28
SYNPO-204ENST00000519664 GJB4Q9NTQ9 266 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 RTCBQ9Y3I0 505 aaKnown RBP13.28□□□□□ -0.28
SYNPO-204ENST00000519664 VGLL3A8MV65 326 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 DTHD1Q6ZMT9 781 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 OGFRQ9NZT2 677 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 PYCARDQ9ULZ3 195 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 PCDHA7Q9UN72 937 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 LRRIQ1Q96JM4 1722 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 IQGAP3Q86VI3 1631 aa13.28□□□□□ -0.28
SYNPO-204ENST00000519664 PPP1R12BO60237 982 aaPredicted RBP13.27□□□□□ -0.28
SYNPO-204ENST00000519664 BMP15O95972 392 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 IBSPP21815 317 aaPredicted RBP13.27□□□□□ -0.28
SYNPO-204ENST00000519664 LONRF3Q496Y0 759 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 BCCIPQ9P287 314 aaKnown RBP eCLIP13.27□□□□□ -0.28
SYNPO-204ENST00000519664 MACROD2A1Z1Q3 448 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 ERLIN2O94905 339 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 PDE6AP16499 860 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 ATL3Q6DD88 541 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 CCDC113Q9H0I3 377 aa13.27□□□□□ -0.28
SYNPO-204ENST00000519664 MAP3K4Q9Y6R4 1608 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 SSH2Q76I76 1423 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 CHD1O14646 1710 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 UBAP1LF5GYI3 381 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 DEXIO95424 95 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 TXLNBQ8N3L3 684 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 MYO6Q9UM54 1294 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 SAMM50Q9Y512 469 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 CLIC4Q9Y696 253 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 PTCH1Q13635 1447 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 ABCC3O15438 1527 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 PFKFB1P16118 471 aa13.27□□□□□ -0.29
SYNPO-204ENST00000519664 SMARCC1Q92922 1105 aaPredicted RBP13.27□□□□□ -0.29
SYNPO-204ENST00000519664 USP17L12C9JPN9 530 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 USP17L21D6R901 530 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 IGKV5-2P06315 115 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 HIBADHP31937 336 aaKnown RBP13.26□□□□□ -0.29
SYNPO-204ENST00000519664 NDUFA8P51970 172 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE1Q96RT6 745 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 RMND1Q9NWS8 449 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 KIAA1468Q9P260 1216 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 ERBB4Q15303 1308 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 PFKFB2O60825 505 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 FGFR1OPO95684 399 aaKnown RBP13.26□□□□□ -0.29
SYNPO-204ENST00000519664 ELF2Q15723 593 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 IGSF22Q8N9C0 903 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 SPAG5Q96R06 1193 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 ZC3H12CQ9C0D7 883 aaKnown RBP13.26□□□□□ -0.29
SYNPO-204ENST00000519664 ZDHHC9Q9Y397 364 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 ERBB3P21860 1342 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms