RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 ZNF574Q6ZN55 896 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-209ENST00000519485 NETO1Q8TDF5 533 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 WDR18Q9BV38 432 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 ZNF576Q9H609 170 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 VAV3Q9UKW4 847 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 ECEL1O95672 775 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 PRKCQQ04759 706 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 AP3B2Q13367 1082 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 SPRED3Q2MJR0 410 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 KRTAP19-4Q3LI73 84 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 BHLHE22Q8NFJ8 381 aaPredicted RBP6.21□□□□□ -1.42
CSMD3-209ENST00000519485 SERPINA10Q9UK55 444 aa6.21□□□□□ -1.42
CSMD3-209ENST00000519485 TMEM88BA6NKF7 163 aa6.2□□□□□ -1.42
CSMD3-209ENST00000519485 FKBP4Q02790 459 aaKnown RBP eCLIP6.2□□□□□ -1.42
CSMD3-209ENST00000519485 AAMPQ13685 434 aa6.2□□□□□ -1.42
CSMD3-209ENST00000519485 MBNL3Q9NUK0 354 aaKnown RBP6.2□□□□□ -1.42
CSMD3-209ENST00000519485 PPP1R9AQ9ULJ8 1098 aa6.2□□□□□ -1.42
CSMD3-209ENST00000519485 MTMR7Q9Y216 660 aa6.2□□□□□ -1.42
CSMD3-209ENST00000519485 DAGLAQ9Y4D2 1042 aa6.2□□□□□ -1.42
CSMD3-209ENST00000519485 POLR3DP05423 398 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-209ENST00000519485 RNASE1P07998 156 aaKnown RBP6.19□□□□□ -1.42
CSMD3-209ENST00000519485 CD8BP10966 210 aa6.19□□□□□ -1.42
CSMD3-209ENST00000519485 RPS26P11Q5JNZ5 115 aaPredicted RBP6.19□□□□□ -1.42
CSMD3-209ENST00000519485 FAM168AQ92567 244 aa6.19□□□□□ -1.42
CSMD3-209ENST00000519485 CRIM1Q9NZV1 1036 aa6.19□□□□□ -1.42
CSMD3-209ENST00000519485 TMPRSS2O15393 492 aa6.18□□□□□ -1.42
CSMD3-209ENST00000519485 BNIP3Q12983 259 aa6.18□□□□□ -1.42
CSMD3-209ENST00000519485 IFI16Q16666 785 aaKnown RBP6.18□□□□□ -1.42
CSMD3-209ENST00000519485 PLD6Q8N2A8 252 aaKnown RBP6.18□□□□□ -1.42
CSMD3-209ENST00000519485 CCDC97Q96F63 343 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-209ENST00000519485 ATXN3LQ9H3M9 355 aa6.18□□□□□ -1.42
CSMD3-209ENST00000519485 RC3H2Q9HBD1 1191 aaKnown RBP6.18□□□□□ -1.42
CSMD3-209ENST00000519485 CCDC87Q9NVE4 849 aa6.18□□□□□ -1.42
CSMD3-209ENST00000519485 ADAMTS6Q9UKP5 1117 aa6.18□□□□□ -1.42
CSMD3-209ENST00000519485 NEFLP07196 543 aa6.17□□□□□ -1.42
CSMD3-209ENST00000519485 FAM87AP0C7U9 286 aa6.17□□□□□ -1.42
CSMD3-209ENST00000519485 ZNF124Q15973 351 aa6.17□□□□□ -1.42
CSMD3-209ENST00000519485 PKN1Q16512 942 aa6.17□□□□□ -1.42
CSMD3-209ENST00000519485 PRPF40BQ6NWY9 871 aaKnown RBP6.17□□□□□ -1.42
CSMD3-209ENST00000519485 HNRNPUQ00839 825 aaKnown RBP eCLIP6.16□□□□□ -1.42
CSMD3-209ENST00000519485 MESP2Q0VG99 397 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 PDE3AQ14432 1141 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 KIF4BQ2VIQ3 1234 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 PHLDB3Q6NSJ2 640 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 KSR1Q8IVT5 923 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 LRRN4CLQ8ND94 238 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 FLAD1Q8NFF5 587 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 FANCD2OSQ96PS1 177 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 KRT82Q9NSB4 513 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 PCDHGC5Q9Y5F6 944 aa6.16□□□□□ -1.42
CSMD3-209ENST00000519485 SLFN14P0C7P3 912 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 ID3Q02535 119 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 CDK5R2Q13319 367 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 C14orf37Q86TY3 774 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 PI4K2BQ8TCG2 481 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 TNKS2Q9H2K2 1166 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 EGFL7Q9UHF1 273 aa6.15□□□□□ -1.42
CSMD3-209ENST00000519485 TMEM265A0A087WTH1 108 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 CEACAM5P06731 702 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 OXCT1P55809 520 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 SLC23A3Q6PIS1 610 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 CILP2Q8IUL8 1156 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 SMYD4Q8IYR2 804 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-209ENST00000519485 FAM181AQ8N9Y4 354 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 FAM84AQ96KN4 292 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 HRASLS5Q96KN8 279 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 SLC38A3Q99624 504 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 KRTAP17-1Q9BYP8 105 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 KRTAP4-11Q9BYQ6 195 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 CCDC86Q9H6F5 360 aaKnown RBP6.14□□□□□ -1.43
CSMD3-209ENST00000519485 PIDD1Q9HB75 910 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 ABCB6Q9NP58 842 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 DISC1Q9NRI5 854 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 FAM53CQ9NYF3 392 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 SNX11Q9Y5W9 270 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 U3KQE9 123 aa6.14□□□□□ -1.43
CSMD3-209ENST00000519485 ZNF862O60290 1169 aa6.13□□□□□ -1.43
CSMD3-209ENST00000519485 PPP1R15AO75807 674 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-209ENST00000519485 ANGEL2Q5VTE6 544 aaKnown RBP6.13□□□□□ -1.43
CSMD3-209ENST00000519485 WDR89Q96FK6 387 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-209ENST00000519485 DUSP23Q9BVJ7 150 aa6.13□□□□□ -1.43
CSMD3-209ENST00000519485 EHD4Q9H223 541 aa6.13□□□□□ -1.43
CSMD3-209ENST00000519485 LGR6Q9HBX8 967 aa6.13□□□□□ -1.43
CSMD3-209ENST00000519485 PCOLCE2Q9UKZ9 415 aa6.13□□□□□ -1.43
CSMD3-209ENST00000519485 AOC3Q16853 763 aa6.12□□□□□ -1.43
CSMD3-209ENST00000519485 USPL1Q5W0Q7 1092 aa6.12□□□□□ -1.43
CSMD3-209ENST00000519485 PLAGL2Q9UPG8 496 aa6.12□□□□□ -1.43
CSMD3-209ENST00000519485 ARID3CA6NKF2 412 aa6.11□□□□□ -1.43
CSMD3-209ENST00000519485 CPNE3O75131 537 aaKnown RBP6.11□□□□□ -1.43
CSMD3-209ENST00000519485 GSTP1P09211 210 aaKnown RBP6.11□□□□□ -1.43
CSMD3-209ENST00000519485 LIG1P18858 919 aa6.11□□□□□ -1.43
CSMD3-209ENST00000519485 FAM129BQ96TA1 746 aa6.11□□□□□ -1.43
CSMD3-209ENST00000519485 DNAJC25Q9H1X3 360 aa6.11□□□□□ -1.43
CSMD3-209ENST00000519485 NPHS2Q9NP85 383 aa6.11□□□□□ -1.43
CSMD3-209ENST00000519485 TMEM238LA0A1B0GVL6 79 aa6.1□□□□□ -1.43
CSMD3-209ENST00000519485 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
CSMD3-209ENST00000519485 ICMTO60725 284 aa6.1□□□□□ -1.43
CSMD3-209ENST00000519485 LEFTY1O75610 366 aa6.1□□□□□ -1.43
CSMD3-209ENST00000519485 CD96P40200 585 aa6.1□□□□□ -1.43
CSMD3-209ENST00000519485 FAAP100Q0VG06 881 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms