RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	COL1A1	P02452	1464 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	USP17L3	A6NCW0	530 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	USP17L4	A6NCW7	530 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	WTIP	A6NIX2	430 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	GSG1L2	A8MUP6	293 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	PPIP5K2	O43314	1243 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	C21orf2	O43822	256 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	DPEP1	P16444	411 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	PDC	P20941	246 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	PTMS	P20962	102 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	PDE4B	Q07343	736 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	ADCK5	Q3MIX3	580 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	CCDC178	Q5BJE1	867 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	USP17L1	Q7RTZ2	530 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	LCORL	Q8N3X6	602 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	TEKT1	Q969V4	418 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	SPON1	Q9HCB6	807 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	ANAPC4	Q9UJX5	808 aa		11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM3-222	ENST00000515609	KIF13B	Q9NQT8	1826 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	GPR75-ASB3	A0A0A6YYF3	556 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609		A0A0G2JLW4	131 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	USP5	P45974	858 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	SBK1	Q52WX2	424 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	AKNAD1	Q5T1N1	836 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	HHIPL2	Q6UWX4	724 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	SYNE3	Q6ZMZ3	975 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	ESR2	Q92731	530 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	FBXW7	Q969H0	707 aa		11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	ZNF274	Q96GC6	653 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	SLK	Q9H2G2	1235 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
TPM3-222	ENST00000515609	KIAA1551	Q9HCM1	1747 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	ECE2	O60344	883 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	CHGB	P05060	677 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	PPARA	Q07869	468 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	PPP2R5B	Q15173	497 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	SLFNL1	Q499Z3	407 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	CPLX2	Q6PUV4	134 aa	Known RBP	11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	NIM1K	Q8IY84	436 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	LARGE2	Q8N3Y3	721 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	STAG1	Q8WVM7	1258 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	JDP2	Q8WYK2	163 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	HDAC9	Q9UKV0	1011 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	SMC3	Q9UQE7	1217 aa		11.18	□□□□□ -0.62
TPM3-222	ENST00000515609	GAK	O14976	1311 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	GOLGA6L22	H0YM25	854 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	PRC1	O43663	620 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	CD2BP2	O95400	341 aa	Known RBP	11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	HAND2	P61296	217 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	EXOSC10	Q01780	885 aa	Known RBP	11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	DOK7	Q18PE1	504 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609		Q6ZUG5	572 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	IQCA1	Q86XH1	822 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	OGFOD1	Q8N543	542 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	GPR101	Q96P66	508 aa	Predicted RBP	11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	GBP4	Q96PP9	640 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	LLPH	Q9BRT6	129 aa	Known RBP	11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	UBAC1	Q9BSL1	405 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	AGXT2	Q9BYV1	514 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	TAOK3	Q9H2K8	898 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	SERPINA10	Q9UK55	444 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	TTF2	Q9UNY4	1162 aa	Known RBP	11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	ATP6V1D	Q9Y5K8	247 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	CACNA1S	Q13698	1873 aa		11.17	□□□□□ -0.62
TPM3-222	ENST00000515609	SLX4	Q8IY92	1834 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	LTBP3	Q9NS15	1303 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	CCDC196	A0A1B0GTZ2	297 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	MINDY4B	A8MYZ0	360 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	FOXP2	O15409	715 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	CDKL5	O76039	1030 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	KCNA3	P22001	575 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	LIFR	P42702	1097 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	BTD	P43251	543 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	RCAN1	P53805	252 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	EVC	P57679	992 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	HMGN5	P82970	282 aa	Known RBP	11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	TNIP1	Q15025	636 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	PPP4R3B	Q5MIZ7	849 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	TTC6	Q86TZ1	520 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	TEX11	Q8IYF3	940 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	TOMM22	Q9NS69	142 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	MCM9	Q9NXL9	1143 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	ZNRF3	Q9ULT6	936 aa		11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	ANGEL1	Q9UNK9	670 aa	Known RBP	11.16	□□□□□ -0.62
TPM3-222	ENST00000515609	USP17L12	C9JPN9	530 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	USP17L21	D6R901	530 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	NPM3	O75607	178 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	POLR3D	P05423	398 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	IARS	P41252	1262 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	DYNLL1	P63167	89 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	AOC3	Q16853	763 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	NOL8	Q76FK4	1167 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	ADGRA1	Q86SQ6	560 aa		11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM3-222	ENST00000515609	SPRYD3	Q8NCJ5	442 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms