RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 CWC27Q6UX04 472 aaKnown RBP25.25■■□□□ 1.63
LSM6-207ENST00000515311 MIGA1Q8NAN2 632 aa25.25■■□□□ 1.63
LSM6-207ENST00000515311 RIOK1Q9BRS2 568 aaKnown RBP25.25■■□□□ 1.63
LSM6-207ENST00000515311 RAD50Q92878 1312 aa25.25■■□□□ 1.63
LSM6-207ENST00000515311 FOCADQ5VW36 1801 aa25.25■■□□□ 1.63
LSM6-207ENST00000515311 CDK5RAP2Q96SN8 1893 aa25.25■■□□□ 1.63
LSM6-207ENST00000515311 MCMDC2Q4G0Z9 681 aa25.24■■□□□ 1.63
LSM6-207ENST00000515311 SAMD7Q7Z3H4 446 aa25.24■■□□□ 1.63
LSM6-207ENST00000515311 PRMT6Q96LA8 375 aaPredicted RBP25.24■■□□□ 1.63
LSM6-207ENST00000515311 AATFQ9NY61 560 aaKnown RBP eCLIP25.24■■□□□ 1.63
LSM6-207ENST00000515311 POTECB2RU33 542 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 M0R2C6 588 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 MBD4O95243 580 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 EGFRP00533 1210 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 EPHX2P34913 555 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 TBC1D10BQ4KMP7 808 aaPredicted RBP25.23■■□□□ 1.63
LSM6-207ENST00000515311 AIDAQ96BJ3 306 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 SEC62Q99442 399 aaKnown RBP25.23■■□□□ 1.63
LSM6-207ENST00000515311 PCDHAC2Q9Y5I4 1007 aa25.23■■□□□ 1.63
LSM6-207ENST00000515311 WNT10BO00744 389 aa25.22■■□□□ 1.63
LSM6-207ENST00000515311 MFAP1P55081 439 aaKnown RBP25.22■■□□□ 1.63
LSM6-207ENST00000515311 RHBDL3P58872 404 aa25.22■■□□□ 1.63
LSM6-207ENST00000515311 USP50Q70EL3 339 aaPredicted RBP25.22■■□□□ 1.63
LSM6-207ENST00000515311 TRPM4Q8TD43 1214 aa25.22■■□□□ 1.63
LSM6-207ENST00000515311 TAF1DQ9H5J8 278 aaPredicted RBP25.22■■□□□ 1.63
LSM6-207ENST00000515311 GPAA1O43292 621 aa25.21■■□□□ 1.63
LSM6-207ENST00000515311 MYO1BO43795 1136 aa25.21■■□□□ 1.63
LSM6-207ENST00000515311 DYNLL1P63167 89 aaKnown RBP25.21■■□□□ 1.63
LSM6-207ENST00000515311 CDC42EP5Q6NZY7 148 aa25.21■■□□□ 1.63
LSM6-207ENST00000515311 LCORLQ8N3X6 602 aa25.21■■□□□ 1.63
LSM6-207ENST00000515311 ESYT1Q9BSJ8 1104 aa25.21■■□□□ 1.63
LSM6-207ENST00000515311 CCDC171Q6TFL3 1326 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 SGSM2O43147 1006 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 VEGFAP15692 232 aaPredicted RBP25.2■■□□□ 1.62
LSM6-207ENST00000515311 NBPF9Q3BBW0 867 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 SPDYE2Q495Y8 402 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 RBM26Q5T8P6 1007 aaKnown RBP25.2■■□□□ 1.62
LSM6-207ENST00000515311 SH3RF3Q8TEJ3 882 aaPredicted RBP25.2■■□□□ 1.62
LSM6-207ENST00000515311 STRBPQ96SI9 672 aaKnown RBP25.2■■□□□ 1.62
LSM6-207ENST00000515311 ARMT1Q9H993 441 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 USP40Q9NVE5 1235 aa25.2■■□□□ 1.62
LSM6-207ENST00000515311 GNAT2P19087 354 aa25.19■■□□□ 1.62
LSM6-207ENST00000515311 PNMA8AQ86V59 439 aaPredicted RBP25.19■■□□□ 1.62
LSM6-207ENST00000515311 CRNKL1Q9BZJ0 848 aaKnown RBP25.19■■□□□ 1.62
LSM6-207ENST00000515311 TDRD3Q9H7E2 651 aaKnown RBP25.19■■□□□ 1.62
LSM6-207ENST00000515311 HIRAP54198 1017 aaPredicted RBP25.18■■□□□ 1.62
LSM6-207ENST00000515311 FKBP1CQ5VVH2 108 aa25.18■■□□□ 1.62
LSM6-207ENST00000515311 ZNF589Q86UQ0 364 aaPredicted RBP25.18■■□□□ 1.62
LSM6-207ENST00000515311 CCDC129Q6ZRS4 1044 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 TEX11Q8IYF3 940 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 IL25Q9H293 177 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 RRAGCQ9HB90 399 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 TMOD2Q9NZR1 351 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 ZNF70Q9UC06 446 aaPredicted RBP25.17■■□□□ 1.62
LSM6-207ENST00000515311 NAV1Q8NEY1 1877 aa25.17■■□□□ 1.62
LSM6-207ENST00000515311 RPAP1Q9BWH6 1393 aaPredicted RBP25.17■■□□□ 1.62
LSM6-207ENST00000515311 NPM3O75607 178 aaKnown RBP25.16■■□□□ 1.62
LSM6-207ENST00000515311 WDHD1O75717 1129 aaPredicted RBP25.16■■□□□ 1.62
LSM6-207ENST00000515311 DDX60LQ5H9U9 1706 aaKnown RBP25.16■■□□□ 1.62
LSM6-207ENST00000515311 ZNF526Q8TF50 670 aaPredicted RBP25.16■■□□□ 1.62
LSM6-207ENST00000515311 ZC3H15Q8WU90 426 aaKnown RBP25.16■■□□□ 1.62
LSM6-207ENST00000515311 IDI2Q9BXS1 227 aa25.16■■□□□ 1.62
LSM6-207ENST00000515311 NMRK2Q9NPI5 230 aa25.16■■□□□ 1.62
LSM6-207ENST00000515311 PITPNM2Q9BZ72 1349 aa25.15■■□□□ 1.62
LSM6-207ENST00000515311 SLC4A4Q9Y6R1 1079 aa25.15■■□□□ 1.62
LSM6-207ENST00000515311 CLRN2A0PK11 232 aa25.14■■□□□ 1.62
LSM6-207ENST00000515311 EIF5BO60841 1220 aaKnown RBP25.14■■□□□ 1.62
LSM6-207ENST00000515311 C8orf34Q49A92 452 aa25.14■■□□□ 1.62
LSM6-207ENST00000515311 ATP8A2Q9NTI2 1148 aa25.14■■□□□ 1.62
LSM6-207ENST00000515311 GIMAP6Q6P9H5 292 aa25.13■■□□□ 1.61
LSM6-207ENST00000515311 APOBEC3FQ8IUX4 373 aaKnown RBP25.13■■□□□ 1.61
LSM6-207ENST00000515311 PGAP2Q9UHJ9 254 aa25.13■■□□□ 1.61
LSM6-207ENST00000515311 ASTN2O75129 1339 aaPredicted RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 MYH1P12882 1939 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 GSG1L2A8MUP6 293 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 PATL2C9JE40 543 aaKnown RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 PRKAB2O43741 272 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 USP5P45974 858 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 TNFAIP1Q13829 316 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 ANGEL2Q5VTE6 544 aaKnown RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 TGFBRAP1Q8WUH2 860 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 VEZTQ9HBM0 779 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 GPBP1L1Q9HC44 474 aaPredicted RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 GGA3Q9NZ52 723 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 COL2A1P02458 1487 aaPredicted RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 BAZ2AQ9UIF9 1905 aaKnown RBP25.12■■□□□ 1.61
LSM6-207ENST00000515311 FLT1P17948 1338 aa25.12■■□□□ 1.61
LSM6-207ENST00000515311 FOXP2O15409 715 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 ENTPD3O75355 529 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 HSPD1P10809 573 aaKnown RBP25.11■■□□□ 1.61
LSM6-207ENST00000515311 CACNB3P54284 484 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 NFIAQ12857 509 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 EAPPQ56P03 285 aaPredicted RBP25.11■■□□□ 1.61
LSM6-207ENST00000515311 VPS53Q5VIR6 699 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 KIAA1211Q6ZU35 1233 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 FAM83AQ86UY5 434 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 SDR42E1Q8WUS8 393 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 DDRGK1Q96HY6 314 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 DSCC1Q9BVC3 393 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 NACAP1Q9BZK3 213 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms