RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 MFSD14BQ5SR56 506 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 KSR2Q6VAB6 950 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 G2E3Q7L622 706 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 TSPYL6Q8N831 410 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 TDRD7Q8NHU6 1098 aaKnown RBP13.57□□□□□ -0.24
NEDD9-215ENST00000514660 MPHOSPH8Q99549 860 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 SERPINA10Q9UK55 444 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 KCNH4Q9UQ05 1017 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 RPTORQ8N122 1335 aa13.57□□□□□ -0.24
NEDD9-215ENST00000514660 COL2A1P02458 1487 aaPredicted RBP13.56□□□□□ -0.24
NEDD9-215ENST00000514660 MIGA2Q7L4E1 593 aa13.56□□□□□ -0.24
NEDD9-215ENST00000514660 FAM161BQ96MY7 647 aa13.56□□□□□ -0.24
NEDD9-215ENST00000514660 PRUNE2Q8WUY3 3088 aa13.56□□□□□ -0.24
NEDD9-215ENST00000514660 PPATQ06203 517 aa13.55□□□□□ -0.24
NEDD9-215ENST00000514660 ZNF804AQ7Z570 1209 aa13.55□□□□□ -0.24
NEDD9-215ENST00000514660 WDHD1O75717 1129 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-215ENST00000514660 GYG1P46976 350 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 FCGRTP55899 365 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 FOXO4P98177 505 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 TRIM32Q13049 653 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 GCKRQ14397 625 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 NECAB2Q7Z6G3 386 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 ZNF594Q96JF6 807 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-215ENST00000514660 PTPRFP10586 1907 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 TTC28Q96AY4 2481 aa13.54□□□□□ -0.24
NEDD9-215ENST00000514660 IRF5Q13568 498 aa13.53□□□□□ -0.24
NEDD9-215ENST00000514660 EPHA10Q5JZY3 1008 aa13.53□□□□□ -0.24
NEDD9-215ENST00000514660 PXYLP1Q8TE99 480 aa13.53□□□□□ -0.24
NEDD9-215ENST00000514660 FAM84BQ96KN1 310 aaPredicted RBP13.53□□□□□ -0.24
NEDD9-215ENST00000514660 UBE2OQ9C0C9 1292 aaKnown RBP13.53□□□□□ -0.24
NEDD9-215ENST00000514660 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.53□□□□□ -0.24
NEDD9-215ENST00000514660 ZNF112Q9UJU3 913 aa13.53□□□□□ -0.24
NEDD9-215ENST00000514660 PFASO15067 1338 aa13.53□□□□□ -0.24
NEDD9-215ENST00000514660 LAMA2P24043 3122 aaKnown RBP13.52□□□□□ -0.24
NEDD9-215ENST00000514660 PLIN1O60240 522 aa13.52□□□□□ -0.25
NEDD9-215ENST00000514660 DDX58O95786 925 aaKnown RBP13.52□□□□□ -0.25
NEDD9-215ENST00000514660 COL9A1P20849 921 aa13.52□□□□□ -0.25
NEDD9-215ENST00000514660 TNNI2P48788 182 aa13.52□□□□□ -0.25
NEDD9-215ENST00000514660 APOBEC3HQ6NTF7 200 aaKnown RBP13.52□□□□□ -0.25
NEDD9-215ENST00000514660 PLXNB2O15031 1838 aa13.52□□□□□ -0.25
NEDD9-215ENST00000514660 ANKRD18BA2A2Z9 1011 aa13.51□□□□□ -0.25
NEDD9-215ENST00000514660 SLURP2P0DP57 97 aa13.51□□□□□ -0.25
NEDD9-215ENST00000514660 RUNDC1Q96C34 613 aa13.51□□□□□ -0.25
NEDD9-215ENST00000514660 IQSEC3Q9UPP2 1182 aaPredicted RBP13.51□□□□□ -0.25
NEDD9-215ENST00000514660 PHIPQ8WWQ0 1821 aa13.5□□□□□ -0.25
NEDD9-215ENST00000514660 FAM109BQ6ICB4 259 aaPredicted RBP13.5□□□□□ -0.25
NEDD9-215ENST00000514660 FAM83AQ86UY5 434 aa13.5□□□□□ -0.25
NEDD9-215ENST00000514660 PARK7Q99497 189 aaKnown RBP13.5□□□□□ -0.25
NEDD9-215ENST00000514660 FOXD4L1Q9NU39 408 aa13.5□□□□□ -0.25
NEDD9-215ENST00000514660 MDM2Q00987 491 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-215ENST00000514660 CDX2Q99626 313 aaPredicted RBP13.49□□□□□ -0.25
NEDD9-215ENST00000514660 ZNF341Q9BYN7 854 aa13.49□□□□□ -0.25
NEDD9-215ENST00000514660 NBPF3Q9H094 633 aa13.49□□□□□ -0.25
NEDD9-215ENST00000514660 AK9Q5TCS8 1911 aa13.49□□□□□ -0.25
NEDD9-215ENST00000514660 RPAP1Q9BWH6 1393 aaPredicted RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 TNPO2O14787 897 aaKnown RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 HIBADHP31937 336 aaKnown RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 NEXNQ0ZGT2 675 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 NOL9Q5SY16 702 aaKnown RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 CCDC30Q5VVM6 783 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 ANKLE1Q8NAG6 615 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 ZDHHC15Q96MV8 337 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 PUS3Q9BZE2 481 aaKnown RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 C11orf49Q9H6J7 331 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 IFT57Q9NWB7 429 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.48□□□□□ -0.25
NEDD9-215ENST00000514660 TAOK2Q9UL54 1235 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 ADAMTS8Q9UP79 889 aa13.48□□□□□ -0.25
NEDD9-215ENST00000514660 ZEB1P37275 1124 aaPredicted RBP13.47□□□□□ -0.25
NEDD9-215ENST00000514660 HDLBPQ00341 1268 aaKnown RBP13.47□□□□□ -0.25
NEDD9-215ENST00000514660 NFIAQ12857 509 aa13.47□□□□□ -0.25
NEDD9-215ENST00000514660 LRRC26Q2I0M4 334 aa13.47□□□□□ -0.25
NEDD9-215ENST00000514660 ZFPM1Q8IX07 1006 aa13.47□□□□□ -0.25
NEDD9-215ENST00000514660 GJD2Q9UKL4 321 aa13.47□□□□□ -0.25
NEDD9-215ENST00000514660 OGDHLQ9ULD0 1010 aa13.47□□□□□ -0.25
NEDD9-215ENST00000514660 ATRNL1Q5VV63 1379 aa13.46□□□□□ -0.25
NEDD9-215ENST00000514660 A0A0G2JLL6 359 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 PHF20L1A8MW92 1017 aa13.46□□□□□ -0.25
NEDD9-215ENST00000514660 COL6A1P12109 1028 aa13.46□□□□□ -0.25
NEDD9-215ENST00000514660 CHAF1AQ13111 956 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 IFIT5Q13325 482 aaKnown RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 FKBP1CQ5VVH2 108 aa13.46□□□□□ -0.25
NEDD9-215ENST00000514660 PRRT2Q7Z6L0 340 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 FBXO33Q7Z6M2 555 aa13.46□□□□□ -0.25
NEDD9-215ENST00000514660 CCDC84Q86UT8 332 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 MAFAQ8NHW3 353 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-215ENST00000514660 MUC3AQ02505 3323 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 CXCL11O14625 94 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 CAPN2P17655 700 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 TCP10Q12799 353 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 DCAF15Q66K64 600 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 LMBR1LQ6UX01 489 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 ANKRD13CQ8N6S4 541 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 TEKT1Q969V4 418 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 TTYH1Q9H313 450 aaPredicted RBP13.45□□□□□ -0.26
NEDD9-215ENST00000514660 CHMP3Q9Y3E7 222 aa13.45□□□□□ -0.26
NEDD9-215ENST00000514660 LTBP2Q14767 1821 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 GNAI1P63096 354 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 UBE4AQ14139 1066 aa13.44□□□□□ -0.26
NEDD9-215ENST00000514660 LDHAL6AQ6ZMR3 332 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms