RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 MAGEB6Q8N7X4 407 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 TEKT1Q969V4 418 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 ZBED3Q96IU2 234 aaPredicted RBP11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 PRMT6Q96LA8 375 aaPredicted RBP11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 TDRD3Q9H7E2 651 aaKnown RBP11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 VEZTQ9HBM0 779 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 STAP2Q9UGK3 403 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 SUGT1Q9Y2Z0 365 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 AK9Q5TCS8 1911 aa11.91□□□□□ -0.5
TOPBP1-209ENST00000513818 MROH7-TTC4A0A0A0MT08 1334 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 GAKO14976 1311 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 ERC2O15083 957 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 BTDP43251 543 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 RGS3P49796 1198 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 ERICH6BQ5W0A0 696 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 NAA16Q6N069 864 aaPredicted RBP11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 POTEHQ6S545 545 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 PNMA8AQ86V59 439 aaPredicted RBP11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 LDHDQ86WU2 507 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 MIGA1Q8NAN2 632 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 GLIS2Q9BZE0 524 aaPredicted RBP11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 SERPINA10Q9UK55 444 aa11.9□□□□□ -0.5
TOPBP1-209ENST00000513818 POLR2AP24928 1970 aaKnown RBP11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 TRAF5O00463 557 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 GSPT1P15170 499 aaKnown RBP11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 PDE6AP16499 860 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 CYP7A1P22680 504 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 DYNLL1P63167 89 aaKnown RBP11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 APOBEC3HQ6NTF7 200 aaKnown RBP11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 CHRDL2Q6WN34 429 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 ZDHHC15Q96MV8 337 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 FSD1Q9BTV5 496 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 CDK5RAP2Q96SN8 1893 aa11.89□□□□□ -0.51
TOPBP1-209ENST00000513818 ZNF532Q9HCE3 1301 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 TRIM6-TRIM34B2RNG4 842 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 ECM2O94769 699 aaPredicted RBP11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 HDLBPQ00341 1268 aaKnown RBP11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 MAP3K12Q12852 859 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 TTF1Q15361 905 aaPredicted RBP11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 SLC9C2Q5TAH2 1124 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 PRAMEF18Q5VWM3 479 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 CHADLQ6NUI6 762 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 CDC42EP5Q6NZY7 148 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 HHIPL2Q6UWX4 724 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 CDAN1Q8IWY9 1227 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 KBTBD3Q8NAB2 608 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 MTMR14Q8NCE2 650 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 RILPL2Q969X0 211 aa11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 AATFQ9NY61 560 aaKnown RBP eCLIP11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 ZNF70Q9UC06 446 aaPredicted RBP11.88□□□□□ -0.51
TOPBP1-209ENST00000513818 TCRBV5S4A2TA0A5A2 114 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 TCP10L2B9ZVM9 353 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 TOMM70O94826 608 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 ADD2P35612 726 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 GSTO1P78417 241 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 NFIAQ12857 509 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 TTC22Q5TAA0 569 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 USP48Q86UV5 1035 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 SH3RF3Q8TEJ3 882 aaPredicted RBP11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 OSBPL3Q9H4L5 887 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 NAV1Q8NEY1 1877 aa11.87□□□□□ -0.51
TOPBP1-209ENST00000513818 MYO1BO43795 1136 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 CNTROBQ8N137 903 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 SMC1BQ8NDV3 1235 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 DCPSQ96C86 337 aaKnown RBP11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 USP40Q9NVE5 1235 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 RFX7Q2KHR2 1363 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 FOCADQ5VW36 1801 aa11.86□□□□□ -0.51
TOPBP1-209ENST00000513818 SSC5DA1L4H1 1573 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 CNTNAP1P78357 1384 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 GPR75-ASB3A0A0A6YYF3 556 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 MBD4O95243 580 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 LDHCP07864 332 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 RHBDL3P58872 404 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 TCP10Q12799 353 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 PICALMQ13492 652 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 SLC4A8Q2Y0W8 1093 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 APOBEC3FQ8IUX4 373 aaKnown RBP11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 SULF1Q8IWU6 871 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 SLF2Q8IX21 1173 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 LCORLQ8N3X6 602 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 ZC3H15Q8WU90 426 aaKnown RBP11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 EVI5LQ96CN4 794 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 SEC62Q99442 399 aaKnown RBP11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 NOL10Q9BSC4 688 aaKnown RBP11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 ARMT1Q9H993 441 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 ZNF408Q9H9D4 720 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 DDX4Q9NQI0 724 aaKnown RBP11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 TMOD2Q9NZR1 351 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 PGAP2Q9UHJ9 254 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 PITPNM2Q9BZ72 1349 aa11.85□□□□□ -0.51
TOPBP1-209ENST00000513818 DDX60LQ5H9U9 1706 aaKnown RBP11.84□□□□□ -0.51
TOPBP1-209ENST00000513818 M0R2C6 588 aa11.84□□□□□ -0.51
TOPBP1-209ENST00000513818 WDHD1O75717 1129 aaPredicted RBP11.84□□□□□ -0.51
TOPBP1-209ENST00000513818 SDSP20132 328 aa11.84□□□□□ -0.51
TOPBP1-209ENST00000513818 MMP14P50281 582 aa11.84□□□□□ -0.51
TOPBP1-209ENST00000513818 RASA3Q14644 834 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms